Analysis of interatomic Contacts of Structural Units in PDB entry:
8TB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TB7 entry

There are 4 chains in PDB entry 8TB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 52	GLY 431
H	GLU 4	LYS 228
N	GLN 1	SER 119
L	ASP 2	ARG 213

There are 19 helices in PDB entry 8TB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	54	78	Right-handed alpha
Helix 2	AA2	R	85	108	Right-handed alpha
Helix 3	AA3	R	125	155	Right-handed alpha
Helix 4	AA4	R	156	160	Right-handed 310
Helix 5	AA5	R	164	185	Right-handed alpha
Helix 6	AA6	R	186	188	Right-handed 310
Helix 7	AA7	R	216	266	Right-handed alpha
Helix 8	AA8	R	269	288	Right-handed alpha
Helix 9	AA9	R	302	326	Right-handed alpha
Helix 10	AB1	R	331	349	Right-handed alpha
Helix 11	AB2	R	365	392	Right-handed alpha
Helix 12	AB3	R	403	424	Right-handed alpha
Helix 13	AB4	H	90	94	Right-handed 310
Helix 14	AB5	H	107	112	Right-handed alpha
Helix 15	AB6	H	202	206	Right-handed 310
Helix 16	AB7	N	53	56	Right-handed 310
Helix 17	AB8	L	80	84	Right-handed 310
Helix 18	AB9	L	123	130	Right-handed alpha
Helix 19	AC1	L	184	189	Right-handed alpha

There are 13 sheets in PDB entry 8TB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	116	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	168	first strand
Strand 2	H	208	214	anti-parallel
Strand 3	H	219	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	20	24	anti-parallel
Strand 3	N	77	81	anti-parallel
Strand 4	N	69	71	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	114	118	parallel
Strand 3	N	91	98	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	21	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	88	anti-parallel
Strand 4	L	36	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	90	92	first strand
Strand 2	L	98	100	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	152	first strand
Strand 2	L	193	200	anti-parallel
Strand 3	L	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TB7