Analysis of interatomic Contacts of Structural Units in PDB entry:
8TBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TBG entry

There are 4 chains in PDB entry 8TBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0HIS 166
B
 GLY 0HIS 166
C
 MET 1GLU 165
D
 VAL 2GLU 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8TBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
61 67Right-handed 310
Helix 3
AA3
A
68 75Right-handed alpha
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
92 105Right-handed alpha
Helix 6
AA6
A
126 138Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
B
15 26Right-handed alpha
Helix 9
AA9
B
61 67Right-handed 310
Helix 10
AB1
B
68 75Right-handed alpha
Helix 11
AB2
B
86 92Right-handed alpha
Helix 12
AB3
B
92 105Right-handed alpha
Helix 13
AB4
B
126 138Right-handed alpha
Helix 14
AB5
B
151 165Right-handed alpha
Helix 15
AB6
C
29 42Right-handed alpha
Helix 16
AB7
C
119 123Right-handed 310
Helix 17
AB8
C
135 143Right-handed alpha
Helix 18
AB9
C
144 146Right-handed 310
Helix 19
AC1
D
29 42Right-handed alpha
Helix 20
AC2
D
119 123Right-handed 310
Helix 21
AC3
D
135 143Right-handed alpha
Helix 22
AC4
D
144 146Right-handed 310
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There are 4 sheets in PDB entry 8TBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 46first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
2 10parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 46first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
2 10parallel
Strand 4
B
77 83parallel
Strand 5
B
111 116parallel
Strand 6
B
141 143parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
61 64anti-parallel
Strand 3
C
112 115anti-parallel
Strand 4
C
97 100anti-parallel
Strand 5
C
128 134anti-parallel
Strand 6
C
15 24anti-parallel
Strand 7
C
5 12anti-parallel
Strand 8
C
156 165anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
61 64anti-parallel
Strand 3
D
112 115anti-parallel
Strand 4
D
97 100anti-parallel
Strand 5
D
128 134anti-parallel
Strand 6
D
15 24anti-parallel
Strand 7
D
5 12anti-parallel
Strand 8
D
156 164anti-parallel
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