Analysis of interatomic Contacts of Structural Units in PDB entry:
8TBT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TBT entry

There are 4 chains in PDB entry 8TBT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 57	SER 574
B	GLN 57	SER 574
C	GLN 57	SER 574
D	GLN 58	SER 574

There are 99 helices in PDB entry 8TBT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	65	Right-handed alpha
Helix 2	AA2	A	68	75	Right-handed alpha
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	100	111	Right-handed alpha
Helix 5	AA5	A	123	140	Right-handed alpha
Helix 6	AA6	A	188	194	Right-handed 310
Helix 7	AA7	A	206	211	Right-handed alpha
Helix 8	AA8	A	265	279	Right-handed alpha
Helix 9	AA9	A	290	302	Right-handed alpha
Helix 10	AB1	A	303	306	Right-handed 310
Helix 11	AB2	A	316	322	Right-handed alpha
Helix 12	AB3	A	322	330	Right-handed alpha
Helix 13	AB4	A	337	344	Right-handed alpha
Helix 14	AB5	A	345	347	Right-handed 310
Helix 15	AB6	A	348	364	Right-handed alpha
Helix 16	AB7	A	374	379	Right-handed 310
Helix 17	AB8	A	384	398	Right-handed alpha
Helix 18	AB9	A	405	410	Right-handed alpha
Helix 19	AC1	A	413	431	Right-handed alpha
Helix 20	AC2	A	433	445	Right-handed alpha
Helix 21	AC3	A	450	467	Right-handed alpha
Helix 22	AC4	A	478	486	Right-handed alpha
Helix 23	AC5	A	499	506	Right-handed alpha
Helix 24	AC6	A	507	509	Right-handed 310
Helix 25	AC7	A	524	544	Right-handed alpha
Helix 26	AC8	B	60	65	Right-handed alpha
Helix 27	AC9	B	68	75	Right-handed alpha
Helix 28	AD1	B	95	99	Right-handed 310
Helix 29	AD2	B	100	111	Right-handed alpha
Helix 30	AD3	B	123	140	Right-handed alpha
Helix 31	AD4	B	188	194	Right-handed 310
Helix 32	AD5	B	206	211	Right-handed alpha
Helix 33	AD6	B	265	279	Right-handed alpha
Helix 34	AD7	B	290	302	Right-handed alpha
Helix 35	AD8	B	303	306	Right-handed 310
Helix 36	AD9	B	316	322	Right-handed alpha
Helix 37	AE1	B	322	330	Right-handed alpha
Helix 38	AE2	B	337	344	Right-handed alpha
Helix 39	AE3	B	345	347	Right-handed 310
Helix 40	AE4	B	348	364	Right-handed alpha
Helix 41	AE5	B	374	379	Right-handed 310
Helix 42	AE6	B	384	398	Right-handed alpha
Helix 43	AE7	B	405	410	Right-handed alpha
Helix 44	AE8	B	413	431	Right-handed alpha
Helix 45	AE9	B	433	445	Right-handed alpha
Helix 46	AF1	B	450	467	Right-handed alpha
Helix 47	AF2	B	478	486	Right-handed alpha
Helix 48	AF3	B	499	506	Right-handed alpha
Helix 49	AF4	B	507	509	Right-handed 310
Helix 50	AF5	B	524	543	Right-handed alpha
Helix 51	AF6	C	60	66	Right-handed alpha
Helix 52	AF7	C	68	76	Right-handed alpha
Helix 53	AF8	C	95	99	Right-handed 310
Helix 54	AF9	C	100	110	Right-handed alpha
Helix 55	AG1	C	123	140	Right-handed alpha
Helix 56	AG2	C	206	211	Right-handed alpha
Helix 57	AG3	C	265	279	Right-handed alpha
Helix 58	AG4	C	290	302	Right-handed alpha
Helix 59	AG5	C	303	306	Right-handed 310
Helix 60	AG6	C	316	322	Right-handed alpha
Helix 61	AG7	C	322	330	Right-handed alpha
Helix 62	AG8	C	337	344	Right-handed alpha
Helix 63	AG9	C	345	347	Right-handed 310
Helix 64	AH1	C	348	364	Right-handed alpha
Helix 65	AH2	C	374	379	Right-handed 310
Helix 66	AH3	C	384	398	Right-handed alpha
Helix 67	AH4	C	405	410	Right-handed alpha
Helix 68	AH5	C	413	431	Right-handed alpha
Helix 69	AH6	C	433	445	Right-handed alpha
Helix 70	AH7	C	450	467	Right-handed alpha
Helix 71	AH8	C	478	486	Right-handed alpha
Helix 72	AH9	C	499	506	Right-handed alpha
Helix 73	AI1	C	507	509	Right-handed 310
Helix 74	AI2	C	524	543	Right-handed alpha
Helix 75	AI3	D	60	65	Right-handed alpha
Helix 76	AI4	D	68	75	Right-handed alpha
Helix 77	AI5	D	95	99	Right-handed 310
Helix 78	AI6	D	100	111	Right-handed alpha
Helix 79	AI7	D	123	140	Right-handed alpha
Helix 80	AI8	D	190	194	Right-handed 310
Helix 81	AI9	D	206	211	Right-handed alpha
Helix 82	AJ1	D	265	279	Right-handed alpha
Helix 83	AJ2	D	290	302	Right-handed alpha
Helix 84	AJ3	D	303	306	Right-handed 310
Helix 85	AJ4	D	316	322	Right-handed alpha
Helix 86	AJ5	D	322	330	Right-handed alpha
Helix 87	AJ6	D	337	344	Right-handed alpha
Helix 88	AJ7	D	345	347	Right-handed 310
Helix 89	AJ8	D	348	364	Right-handed alpha
Helix 90	AJ9	D	374	379	Right-handed 310
Helix 91	AK1	D	384	398	Right-handed alpha
Helix 92	AK2	D	405	410	Right-handed alpha
Helix 93	AK3	D	413	431	Right-handed alpha
Helix 94	AK4	D	433	445	Right-handed alpha
Helix 95	AK5	D	450	466	Right-handed alpha
Helix 96	AK6	D	478	486	Right-handed alpha
Helix 97	AK7	D	499	506	Right-handed alpha
Helix 98	AK8	D	507	509	Right-handed 310
Helix 99	AK9	D	524	543	Right-handed alpha

There are 15 sheets in PDB entry 8TBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	112	118	parallel
Strand 3	A	152	156	parallel
Strand 4	A	282	285	parallel
Strand 5	A	309	314	parallel
Strand 6	A	332	336	parallel
Strand 7	A	367	370	parallel
Strand 8	A	401	404	parallel
Strand 9	A	89	93	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	245	246	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	182	186	parallel
Strand 3	A	236	240	anti-parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	216	219	anti-parallel
Strand 6	A	252	253	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	516	first strand
Strand 2	A	492	497	parallel
Strand 3	A	470	474	parallel
Strand 4	A	551	557	parallel
Strand 5	A	565	572	anti-parallel
Strand 6	C	565	572	anti-parallel
Strand 7	C	551	557	anti-parallel
Strand 8	C	470	474	parallel
Strand 9	C	492	497	parallel
Strand 10	C	512	516	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	114	118	parallel
Strand 3	B	152	156	parallel
Strand 4	B	282	285	parallel
Strand 5	B	309	314	parallel
Strand 6	B	332	336	parallel
Strand 7	B	367	370	parallel
Strand 8	B	401	404	parallel
Strand 9	B	89	93	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	244	246	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	182	186	parallel
Strand 3	B	235	242	anti-parallel
Strand 4	B	224	232	anti-parallel
Strand 5	B	216	219	anti-parallel
Strand 6	B	252	253	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	516	first strand
Strand 2	B	492	497	parallel
Strand 3	B	470	474	parallel
Strand 4	B	551	557	parallel
Strand 5	B	565	572	anti-parallel
Strand 6	D	565	572	anti-parallel
Strand 7	D	551	557	anti-parallel
Strand 8	D	470	474	parallel
Strand 9	D	492	497	parallel
Strand 10	D	512	516	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	114	118	parallel
Strand 3	C	152	156	parallel
Strand 4	C	282	285	parallel
Strand 5	C	309	314	parallel
Strand 6	C	332	336	parallel
Strand 7	C	367	370	parallel
Strand 8	C	401	404	parallel
Strand 9	C	89	93	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	244	246	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	182	186	parallel
Strand 3	C	236	242	anti-parallel
Strand 4	C	225	228	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	252	253	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	93	first strand
Strand 2	D	114	118	parallel
Strand 3	D	152	156	parallel
Strand 4	D	282	285	parallel
Strand 5	D	309	314	parallel
Strand 6	D	332	336	parallel
Strand 7	D	367	370	parallel
Strand 8	D	401	404	parallel
Strand 9	D	89	93	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	244	245	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	182	186	parallel
Strand 3	D	236	242	anti-parallel
Strand 4	D	224	231	anti-parallel
Strand 5	D	216	219	anti-parallel
Strand 6	D	252	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TBT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TBT