Analysis of interatomic Contacts of Structural Units in PDB entry:
8TC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TC1 entry

There are 3 chains in PDB entry 8TC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	TYR 1107
B	LEU 3	TYR 1107
C	LEU 3	TYR 1107

There are 76 helices in PDB entry 8TC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	268	278	Right-handed alpha
Helix 2	AA2	A	311	317	Right-handed alpha
Helix 3	AA3	A	323	327	Right-handed 310
Helix 4	AA4	A	338	345	Right-handed 310
Helix 5	AA5	A	357	363	Right-handed 310
Helix 6	AA6	A	379	384	Right-handed 310
Helix 7	AA7	A	390	396	Right-handed alpha
Helix 8	AA8	A	412	417	Right-handed alpha
Helix 9	AA9	A	475	478	Right-handed 310
Helix 10	AB1	A	706	713	Right-handed alpha
Helix 11	AB2	A	715	723	Right-handed alpha
Helix 12	AB3	A	725	752	Right-handed alpha
Helix 13	AB4	A	771	775	Right-handed 310
Helix 14	AB5	A	785	794	Right-handed alpha
Helix 15	AB6	A	805	810	Right-handed alpha
Helix 16	AB7	A	812	816	Right-handed 310
Helix 17	AB8	A	817	825	Right-handed alpha
Helix 18	AB9	A	835	854	Right-handed alpha
Helix 19	AC1	A	866	877	Right-handed alpha
Helix 20	AC2	A	881	888	Right-handed alpha
Helix 21	AC3	A	888	909	Right-handed alpha
Helix 22	AC4	A	914	934	Right-handed alpha
Helix 23	AC5	A	935	937	Right-handed 310
Helix 24	AC6	A	945	953	Right-handed alpha
Helix 25	AC7	A	954	1002	Right-handed alpha
Helix 26	AC8	B	268	278	Right-handed alpha
Helix 27	AC9	B	311	317	Right-handed alpha
Helix 28	AD1	B	323	327	Right-handed 310
Helix 29	AD2	B	338	345	Right-handed 310
Helix 30	AD3	B	357	363	Right-handed 310
Helix 31	AD4	B	379	384	Right-handed 310
Helix 32	AD5	B	390	396	Right-handed alpha
Helix 33	AD6	B	412	417	Right-handed alpha
Helix 34	AD7	B	475	478	Right-handed 310
Helix 35	AD8	B	706	713	Right-handed alpha
Helix 36	AD9	B	715	723	Right-handed alpha
Helix 37	AE1	B	725	752	Right-handed alpha
Helix 38	AE2	B	771	775	Right-handed 310
Helix 39	AE3	B	785	794	Right-handed alpha
Helix 40	AE4	B	805	810	Right-handed alpha
Helix 41	AE5	B	812	816	Right-handed 310
Helix 42	AE6	B	817	825	Right-handed alpha
Helix 43	AE7	B	835	854	Right-handed alpha
Helix 44	AE8	B	866	877	Right-handed alpha
Helix 45	AE9	B	881	888	Right-handed alpha
Helix 46	AF1	B	888	909	Right-handed alpha
Helix 47	AF2	B	914	934	Right-handed alpha
Helix 48	AF3	B	935	937	Right-handed 310
Helix 49	AF4	B	945	953	Right-handed alpha
Helix 50	AF5	B	954	1002	Right-handed alpha
Helix 51	AF6	C	268	278	Right-handed alpha
Helix 52	AF7	C	311	317	Right-handed alpha
Helix 53	AF8	C	323	327	Right-handed 310
Helix 54	AF9	C	338	345	Right-handed 310
Helix 55	AG1	C	357	363	Right-handed 310
Helix 56	AG2	C	379	384	Right-handed 310
Helix 57	AG3	C	390	396	Right-handed alpha
Helix 58	AG4	C	412	417	Right-handed alpha
Helix 59	AG5	C	475	478	Right-handed 310
Helix 60	AG6	C	706	713	Right-handed alpha
Helix 61	AG7	C	715	723	Right-handed alpha
Helix 62	AG8	C	725	752	Right-handed alpha
Helix 63	AG9	C	771	775	Right-handed 310
Helix 64	AH1	C	785	794	Right-handed alpha
Helix 65	AH2	C	805	810	Right-handed alpha
Helix 66	AH3	C	812	816	Right-handed 310
Helix 67	AH4	C	817	825	Right-handed alpha
Helix 68	AH5	C	835	854	Right-handed alpha
Helix 69	AH6	C	866	877	Right-handed alpha
Helix 70	AH7	C	881	888	Right-handed alpha
Helix 71	AH8	C	888	909	Right-handed alpha
Helix 72	AH9	C	914	934	Right-handed alpha
Helix 73	AI1	C	935	937	Right-handed 310
Helix 74	AI2	C	945	953	Right-handed alpha
Helix 75	AI3	C	954	1002	Right-handed alpha
Helix 76	AI4	C	1085	1089	Right-handed 310

There are 48 sheets in PDB entry 8TC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	52	59	anti-parallel
Strand 3	A	62	63	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	52	59	anti-parallel
Strand 3	A	237	243	anti-parallel
Strand 4	A	74	80	anti-parallel
Strand 5	A	166	177	anti-parallel
Strand 6	A	180	192	anti-parallel
Strand 7	A	204	210	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	B	538	540	parallel
Strand 3	B	546	550	anti-parallel
Strand 4	B	557	561	anti-parallel
Strand 5	B	519	527	anti-parallel
Strand 6	B	512	516	anti-parallel
Strand 7	B	299	302	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	46	first strand
Strand 2	A	245	253	anti-parallel
Strand 3	A	259	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	217	226	anti-parallel
Strand 3	A	124	128	parallel
Strand 4	A	133	137	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	217	226	anti-parallel
Strand 3	A	87	91	anti-parallel
Strand 4	A	100	105	anti-parallel
Strand 5	A	110	119	anti-parallel
Strand 6	A	140	151	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	288	first strand
Strand 2	A	567	572	anti-parallel
Strand 3	A	582	586	anti-parallel
Strand 4	A	621	624	anti-parallel
Strand 5	A	616	618	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	302	first strand
Strand 2	A	511	516	parallel
Strand 3	A	519	527	anti-parallel
Strand 4	A	557	561	anti-parallel
Strand 5	A	546	550	anti-parallel
Strand 6	A	538	540	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	332	first strand
Strand 2	A	365	377	anti-parallel
Strand 3	A	497	498	anti-parallel
Strand 4	A	335	336	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	332	first strand
Strand 2	A	365	377	anti-parallel
Strand 3	A	480	490	anti-parallel
Strand 4	A	405	411	anti-parallel
Strand 5	A	350	354	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	A	465	467	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	660	665	parallel
Strand 3	A	643	648	anti-parallel
Strand 4	A	637	640	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	672	first strand
Strand 2	C	756	758	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	697	first strand
Strand 2	A	1028	1045	anti-parallel
Strand 3	A	1016	1025	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	705	first strand
Strand 2	A	827	830	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	758	first strand
Strand 2	B	670	672	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1090	1094	first strand
Strand 2	A	1055	1058	anti-parallel
Strand 3	A	1050	1052	anti-parallel
Strand 4	A	1102	1103	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1065	first strand
Strand 2	A	1072	1074	anti-parallel
Strand 3	A	1082	1083	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	52	59	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	52	59	anti-parallel
Strand 3	B	237	243	anti-parallel
Strand 4	B	74	80	anti-parallel
Strand 5	B	166	177	anti-parallel
Strand 6	B	180	192	anti-parallel
Strand 7	B	204	210	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	46	first strand
Strand 2	B	245	253	anti-parallel
Strand 3	B	259	264	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	217	226	anti-parallel
Strand 3	B	124	128	parallel
Strand 4	B	133	137	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	217	226	anti-parallel
Strand 3	B	87	91	anti-parallel
Strand 4	B	100	105	anti-parallel
Strand 5	B	110	119	anti-parallel
Strand 6	B	140	151	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	288	first strand
Strand 2	B	568	572	anti-parallel
Strand 3	B	582	585	anti-parallel
Strand 4	B	621	624	anti-parallel
Strand 5	B	616	618	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	332	first strand
Strand 2	B	365	377	anti-parallel
Strand 3	B	497	498	anti-parallel
Strand 4	B	335	336	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	332	first strand
Strand 2	B	365	377	anti-parallel
Strand 3	B	480	490	anti-parallel
Strand 4	B	405	411	anti-parallel
Strand 5	B	350	354	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	428	first strand
Strand 2	B	465	467	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	628	first strand
Strand 2	B	660	665	parallel
Strand 3	B	643	648	anti-parallel
Strand 4	B	637	640	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	697	first strand
Strand 2	B	1028	1045	anti-parallel
Strand 3	B	1016	1025	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	705	first strand
Strand 2	B	827	830	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	758	first strand
Strand 2	C	670	672	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1090	1094	first strand
Strand 2	B	1055	1058	anti-parallel
Strand 3	B	1050	1052	anti-parallel
Strand 4	B	1102	1103	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1063	1065	first strand
Strand 2	B	1072	1074	anti-parallel
Strand 3	B	1082	1083	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	52	59	anti-parallel
Strand 3	C	62	63	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	52	59	anti-parallel
Strand 3	C	237	243	anti-parallel
Strand 4	C	74	80	anti-parallel
Strand 5	C	166	177	anti-parallel
Strand 6	C	180	192	anti-parallel
Strand 7	C	204	210	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	46	first strand
Strand 2	C	245	253	anti-parallel
Strand 3	C	259	264	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	217	226	anti-parallel
Strand 3	C	124	128	parallel
Strand 4	C	133	137	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	217	226	anti-parallel
Strand 3	C	87	91	anti-parallel
Strand 4	C	99	106	anti-parallel
Strand 5	C	109	119	anti-parallel
Strand 6	C	140	151	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	288	first strand
Strand 2	C	567	572	anti-parallel
Strand 3	C	582	586	anti-parallel
Strand 4	C	621	624	anti-parallel
Strand 5	C	616	618	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	302	first strand
Strand 2	C	511	516	parallel
Strand 3	C	519	527	anti-parallel
Strand 4	C	557	561	anti-parallel
Strand 5	C	546	550	anti-parallel
Strand 6	C	538	540	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	365	377	anti-parallel
Strand 3	C	497	498	anti-parallel
Strand 4	C	335	336	parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	365	377	anti-parallel
Strand 3	C	480	490	anti-parallel
Strand 4	C	405	411	anti-parallel
Strand 5	C	350	354	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	428	first strand
Strand 2	C	465	467	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	627	628	first strand
Strand 2	C	660	665	parallel
Strand 3	C	643	648	anti-parallel
Strand 4	C	637	640	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	697	first strand
Strand 2	C	1028	1045	anti-parallel
Strand 3	C	1016	1025	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	705	first strand
Strand 2	C	827	830	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1090	1094	first strand
Strand 2	C	1055	1058	anti-parallel
Strand 3	C	1050	1052	anti-parallel
Strand 4	C	1102	1103	parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1062	1065	first strand
Strand 2	C	1072	1075	anti-parallel
Strand 3	C	1082	1083	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TC1