Analysis of interatomic Contacts of Structural Units in PDB entry:
8TC8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TC8 entry

There are 3 chains in PDB entry 8TC8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 110	PRO 548
B	LEU 109	PRO 548
C	LEU 109	LYS 490

There are 76 helices in PDB entry 8TC8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	124	Right-handed 310
Helix 2	AA2	A	162	167	Right-handed alpha
Helix 3	AA3	A	167	173	Right-handed alpha
Helix 4	AA4	A	194	196	Right-handed 310
Helix 5	AA5	A	225	232	Right-handed alpha
Helix 6	AA6	A	232	237	Right-handed alpha
Helix 7	AA7	A	239	263	Right-handed alpha
Helix 8	AA8	A	300	312	Right-handed alpha
Helix 9	AA9	A	346	368	Right-handed alpha
Helix 10	AB1	A	370	378	Right-handed alpha
Helix 11	AB2	A	393	403	Right-handed alpha
Helix 12	AB3	A	420	432	Right-handed alpha
Helix 13	AB4	A	441	445	Right-handed 310
Helix 14	AB5	A	481	492	Right-handed alpha
Helix 15	AB6	A	496	498	Right-handed 310
Helix 16	AB7	A	499	504	Right-handed alpha
Helix 17	AB8	A	505	507	Right-handed 310
Helix 18	AB9	A	520	528	Right-handed alpha
Helix 19	AC1	A	532	537	Right-handed 310
Helix 20	AC2	B	116	124	Right-handed 310
Helix 21	AC3	B	162	167	Right-handed alpha
Helix 22	AC4	B	167	173	Right-handed alpha
Helix 23	AC5	B	194	196	Right-handed 310
Helix 24	AC6	B	225	232	Right-handed alpha
Helix 25	AC7	B	232	237	Right-handed alpha
Helix 26	AC8	B	239	263	Right-handed alpha
Helix 27	AC9	B	300	312	Right-handed alpha
Helix 28	AD1	B	346	368	Right-handed alpha
Helix 29	AD2	B	370	378	Right-handed alpha
Helix 30	AD3	B	393	403	Right-handed alpha
Helix 31	AD4	B	420	432	Right-handed alpha
Helix 32	AD5	B	441	445	Right-handed 310
Helix 33	AD6	B	481	492	Right-handed alpha
Helix 34	AD7	B	496	498	Right-handed 310
Helix 35	AD8	B	499	504	Right-handed alpha
Helix 36	AD9	B	505	507	Right-handed 310
Helix 37	AE1	B	520	528	Right-handed alpha
Helix 38	AE2	B	532	537	Right-handed 310
Helix 39	AE3	C	116	124	Right-handed 310
Helix 40	AE4	C	162	167	Right-handed alpha
Helix 41	AE5	C	167	173	Right-handed alpha
Helix 42	AE6	C	194	196	Right-handed 310
Helix 43	AE7	C	225	232	Right-handed alpha
Helix 44	AE8	C	232	237	Right-handed alpha
Helix 45	AE9	C	239	263	Right-handed alpha
Helix 46	AF1	C	300	312	Right-handed alpha
Helix 47	AF2	C	346	368	Right-handed alpha
Helix 48	AF3	C	370	378	Right-handed alpha
Helix 49	AF4	C	393	403	Right-handed alpha
Helix 50	AF5	C	420	432	Right-handed alpha
Helix 51	AF6	C	441	445	Right-handed 310
Helix 52	AF7	C	481	492	Right-handed alpha
Helix 53	AF8	C	496	498	Right-handed 310
Helix 54	AF9	C	499	504	Right-handed alpha
Helix 55	AG1	C	505	507	Right-handed 310
Helix 56	AG2	C	520	528	Right-handed alpha
Helix 57	AG3	C	532	537	Right-handed 310
Helix 58	AG4	D	116	124	Right-handed 310
Helix 59	AG5	D	162	167	Right-handed alpha
Helix 60	AG6	D	167	173	Right-handed alpha
Helix 61	AG7	D	194	196	Right-handed 310
Helix 62	AG8	D	225	232	Right-handed alpha
Helix 63	AG9	D	232	237	Right-handed alpha
Helix 64	AH1	D	239	263	Right-handed alpha
Helix 65	AH2	D	300	312	Right-handed alpha
Helix 66	AH3	D	346	368	Right-handed alpha
Helix 67	AH4	D	370	378	Right-handed alpha
Helix 68	AH5	D	393	403	Right-handed alpha
Helix 69	AH6	D	420	432	Right-handed alpha
Helix 70	AH7	D	441	445	Right-handed 310
Helix 71	AH8	D	481	492	Right-handed alpha
Helix 72	AH9	D	496	498	Right-handed 310
Helix 73	AI1	D	499	504	Right-handed alpha
Helix 74	AI2	D	505	507	Right-handed 310
Helix 75	AI3	D	520	528	Right-handed alpha
Helix 76	AI4	D	532	537	Right-handed 310

There are 16 sheets in PDB entry 8TC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	127	140	parallel
Strand 3	A	178	187	anti-parallel
Strand 4	A	198	209	anti-parallel
Strand 5	A	155	161	parallel
Strand 6	A	144	150	anti-parallel
Strand 7	A	127	140	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	314	321	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	513	519	anti-parallel
Strand 5	A	470	477	anti-parallel
Strand 6	A	461	466	anti-parallel
Strand 7	A	435	438	anti-parallel
Strand 8	A	389	392	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	286	289	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	455	459	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	127	140	parallel
Strand 3	B	178	187	anti-parallel
Strand 4	B	198	209	anti-parallel
Strand 5	B	155	161	parallel
Strand 6	B	144	150	anti-parallel
Strand 7	B	127	140	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	314	321	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	513	519	anti-parallel
Strand 5	B	470	477	anti-parallel
Strand 6	B	461	466	anti-parallel
Strand 7	B	435	438	anti-parallel
Strand 8	B	389	392	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	286	289	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	455	459	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	127	140	parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	198	209	anti-parallel
Strand 5	C	155	161	parallel
Strand 6	C	144	150	anti-parallel
Strand 7	C	127	140	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	314	321	parallel
Strand 3	C	334	343	anti-parallel
Strand 4	C	513	519	anti-parallel
Strand 5	C	470	477	anti-parallel
Strand 6	C	461	466	anti-parallel
Strand 7	C	435	438	anti-parallel
Strand 8	C	389	392	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	286	289	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	455	459	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	127	140	parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	198	209	anti-parallel
Strand 5	D	155	161	parallel
Strand 6	D	144	150	anti-parallel
Strand 7	D	127	140	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	314	321	parallel
Strand 3	D	334	343	anti-parallel
Strand 4	D	513	519	anti-parallel
Strand 5	D	470	478	anti-parallel
Strand 6	D	461	466	anti-parallel
Strand 7	D	435	438	anti-parallel
Strand 8	D	389	392	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	274	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	286	289	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	452	first strand
Strand 2	D	455	459	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TC8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TC8