Analysis of interatomic Contacts of Structural Units in PDB entry:
8TCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TCI entry

There are 8 chains in PDB entry 8TCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 458GLU 740
B
 THR 181SER 379
C
 THR 181SER 379
D
 LYS 458GLU 740
E
 C 1 G 4
E
 G 6 G 24
F
 C 1 G 4
F
 G 6 G 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8TCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
472 481Right-handed alpha
Helix 2
AA2
A
494 505Right-handed alpha
Helix 3
AA3
A
514 518Right-handed 310
Helix 4
AA4
A
519 527Right-handed alpha
Helix 5
AA5
A
553 557Right-handed 310
Helix 6
AA6
A
558 570Right-handed alpha
Helix 7
AA7
A
590 602Right-handed alpha
Helix 8
AA8
A
609 613Right-handed 310
Helix 9
AA9
A
642 647Right-handed alpha
Helix 10
AB1
A
665 669Right-handed 310
Helix 11
AB2
A
688 697Right-handed alpha
Helix 12
AB3
A
709 719Right-handed alpha
Helix 13
AB4
A
722 731Right-handed alpha
Helix 14
AB5
A
732 736Right-handed 310
Helix 15
AB6
B
199 204Right-handed alpha
Helix 16
AB7
B
205 207Right-handed 310
Helix 17
AB8
B
223 227Right-handed 310
Helix 18
AB9
B
228 236Right-handed alpha
Helix 19
AC1
B
255 271Right-handed alpha
Helix 20
AC2
B
291 303Right-handed alpha
Helix 21
AC3
B
339 350Right-handed alpha
Helix 22
AC4
B
360 369Right-handed alpha
Helix 23
AC5
B
370 374Right-handed 310
Helix 24
AC6
C
183 187Right-handed 310
Helix 25
AC7
C
228 235Right-handed alpha
Helix 26
AC8
C
255 271Right-handed alpha
Helix 27
AC9
C
291 303Right-handed alpha
Helix 28
AD1
C
339 350Right-handed alpha
Helix 29
AD2
C
360 369Right-handed alpha
Helix 30
AD3
C
370 374Right-handed 310
Helix 31
AD4
D
472 481Right-handed alpha
Helix 32
AD5
D
494 505Right-handed alpha
Helix 33
AD6
D
514 518Right-handed 310
Helix 34
AD7
D
519 527Right-handed alpha
Helix 35
AD8
D
557 570Right-handed alpha
Helix 36
AD9
D
590 602Right-handed alpha
Helix 37
AE1
D
611 613Right-handed 310
Helix 38
AE2
D
642 646Right-handed 310
Helix 39
AE3
D
664 669Right-handed 310
Helix 40
AE4
D
688 696Right-handed alpha
Helix 41
AE5
D
709 720Right-handed alpha
Helix 42
AE6
D
722 731Right-handed alpha
Helix 43
AE7
D
732 736Right-handed 310
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There are 6 sheets in PDB entry 8TCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
485 491parallel
Strand 3
A
462 467parallel
Strand 4
A
531 534parallel
Strand 5
A
580 586parallel
Strand 6
A
620 624anti-parallel
Strand 7
A
606 608anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 653first strand
Strand 2
A
678 680anti-parallel
Strand 3
A
683 685anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 220first strand
Strand 2
B
192 194parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
316 325anti-parallel
Strand 6
B
307 313anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 286parallel
Strand 5
C
316 325anti-parallel
Strand 6
C
307 313anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
510 511first strand
Strand 2
D
485 491parallel
Strand 3
D
462 467parallel
Strand 4
D
531 534parallel
Strand 5
D
580 586parallel
Strand 6
D
619 624anti-parallel
Strand 7
D
606 609anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
651 653first strand
Strand 2
D
678 680anti-parallel
Strand 3
D
683 685anti-parallel
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