Analysis of interatomic Contacts of Structural Units in PDB entry:
8TCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TCL entry

There is 1 chain in PDB entry 8TCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 0VAL 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8TCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 7Right-handed 310
Helix 2
AA2
B
27 44Right-handed alpha
Helix 3
AA3
B
77 84Right-handed alpha
Helix 4
AA4
B
99 103Right-handed 310
Helix 5
AA5
B
112 118Right-handed 310
Helix 6
AA6
B
124 129Right-handed 310
Helix 7
AA7
B
134 138Right-handed 310
Helix 8
AA8
B
154 175Right-handed alpha
Helix 9
AA9
B
194 212Right-handed alpha
Helix 10
AB1
B
235 239Right-handed 310
Helix 11
AB2
B
363 384Right-handed alpha
Helix 12
AB3
B
394 402Right-handed alpha
Helix 13
AB4
B
403 405Right-handed 310
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There are 4 sheets in PDB entry 8TCL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
72 75anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
232 234anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 355first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 332anti-parallel
Strand 4
B
388 390parallel
Strand 5
B
414 415parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il