Analysis of interatomic Contacts of Structural Units in PDB entry:
8TCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TCR entry

There are 4 chains in PDB entry 8TCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 31	SER 300
B	LYS 31	SER 300
A	LYS 31	SER 300
D	LYS 31	SER 300

There are 53 helices in PDB entry 8TCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	41	46	Right-handed alpha
Helix 2	AA2	C	55	66	Right-handed alpha
Helix 3	AA3	C	84	95	Right-handed alpha
Helix 4	AA4	C	109	116	Right-handed alpha
Helix 5	AA5	C	120	136	Right-handed alpha
Helix 6	AA6	C	150	171	Right-handed alpha
Helix 7	AA7	C	181	184	Right-handed 310
Helix 8	AA8	C	193	200	Right-handed alpha
Helix 9	AA9	C	212	218	Right-handed alpha
Helix 10	AB1	C	221	229	Right-handed alpha
Helix 11	AB2	C	251	258	Right-handed alpha
Helix 12	AB3	C	258	263	Right-handed alpha
Helix 13	AB4	C	277	292	Right-handed alpha
Helix 14	AB5	B	39	45	Right-handed 310
Helix 15	AB6	B	55	66	Right-handed alpha
Helix 16	AB7	B	84	95	Right-handed alpha
Helix 17	AB8	B	109	116	Right-handed alpha
Helix 18	AB9	B	120	136	Right-handed alpha
Helix 19	AC1	B	150	171	Right-handed alpha
Helix 20	AC2	B	181	184	Right-handed 310
Helix 21	AC3	B	193	200	Right-handed alpha
Helix 22	AC4	B	212	218	Right-handed alpha
Helix 23	AC5	B	221	229	Right-handed alpha
Helix 24	AC6	B	251	258	Right-handed alpha
Helix 25	AC7	B	258	263	Right-handed alpha
Helix 26	AC8	B	277	292	Right-handed alpha
Helix 27	AC9	A	39	42	Right-handed 310
Helix 28	AD1	A	55	66	Right-handed alpha
Helix 29	AD2	A	84	95	Right-handed alpha
Helix 30	AD3	A	109	116	Right-handed alpha
Helix 31	AD4	A	118	120	Right-handed 310
Helix 32	AD5	A	121	135	Right-handed alpha
Helix 33	AD6	A	150	171	Right-handed alpha
Helix 34	AD7	A	181	184	Right-handed 310
Helix 35	AD8	A	193	200	Right-handed alpha
Helix 36	AD9	A	212	218	Right-handed alpha
Helix 37	AE1	A	221	229	Right-handed alpha
Helix 38	AE2	A	251	258	Right-handed alpha
Helix 39	AE3	A	258	263	Right-handed alpha
Helix 40	AE4	A	277	292	Right-handed alpha
Helix 41	AE5	D	39	45	Right-handed 310
Helix 42	AE6	D	55	66	Right-handed alpha
Helix 43	AE7	D	84	95	Right-handed alpha
Helix 44	AE8	D	109	116	Right-handed alpha
Helix 45	AE9	D	118	135	Right-handed alpha
Helix 46	AF1	D	150	171	Right-handed alpha
Helix 47	AF2	D	181	184	Right-handed 310
Helix 48	AF3	D	193	200	Right-handed alpha
Helix 49	AF4	D	212	218	Right-handed alpha
Helix 50	AF5	D	221	229	Right-handed alpha
Helix 51	AF6	D	251	258	Right-handed alpha
Helix 52	AF7	D	258	263	Right-handed alpha
Helix 53	AF8	D	277	292	Right-handed alpha

There are 14 sheets in PDB entry 8TCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	102	first strand
Strand 2	C	69	72	parallel
Strand 3	C	35	37	parallel
Strand 4	C	266	270	parallel
Strand 5	C	235	239	parallel
Strand 6	C	207	211	parallel
Strand 7	C	174	178	parallel
Strand 8	C	139	142	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	79	80	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	191	192	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	69	72	parallel
Strand 3	B	35	37	parallel
Strand 4	B	266	270	parallel
Strand 5	B	235	239	parallel
Strand 6	B	207	211	parallel
Strand 7	B	174	178	parallel
Strand 8	B	139	142	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	51	54	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	79	80	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	191	192	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	102	first strand
Strand 2	A	69	72	parallel
Strand 3	A	35	37	parallel
Strand 4	A	266	269	parallel
Strand 5	A	235	238	parallel
Strand 6	A	207	211	parallel
Strand 7	A	174	178	parallel
Strand 8	A	139	142	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	79	80	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	191	192	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	102	first strand
Strand 2	D	69	72	parallel
Strand 3	D	35	37	parallel
Strand 4	D	266	269	parallel
Strand 5	D	235	238	parallel
Strand 6	D	207	211	parallel
Strand 7	D	174	178	parallel
Strand 8	D	139	142	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	51	54	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	79	80	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	191	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TCR