Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TDE entry

There are 2 chains in PDB entry 8TDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35ASP 290
B
 ALA 35ASP 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8TDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 105Right-handed 310
Helix 2
AA2
A
157 161Right-handed 310
Helix 3
AA3
A
173 178Right-handed 310
Helix 4
AA4
A
234 243Right-handed alpha
Helix 5
AA5
A
251 260Right-handed alpha
Helix 6
AA6
A
262 266Right-handed 310
Helix 7
AA7
B
101 105Right-handed 310
Helix 8
AA8
B
157 161Right-handed 310
Helix 9
AA9
B
173 178Right-handed 310
Helix 10
AB1
B
234 243Right-handed alpha
Helix 11
AB2
B
251 260Right-handed alpha
Helix 12
AB3
B
262 266Right-handed 310
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There are 10 sheets in PDB entry 8TDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
52 57anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
93 96anti-parallel
Strand 4
A
87 90anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
121 129anti-parallel
Strand 4
A
207 214anti-parallel
Strand 5
A
217 222anti-parallel
Strand 6
A
225 231anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
112 114anti-parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
134 141anti-parallel
Strand 5
A
164 168anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
153 155anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
52 57anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
279 288anti-parallel
Strand 3
B
93 96anti-parallel
Strand 4
B
87 90anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
279 288anti-parallel
Strand 3
B
121 129anti-parallel
Strand 4
B
207 214anti-parallel
Strand 5
B
217 222anti-parallel
Strand 6
B
225 231anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
112 118anti-parallel
Strand 3
B
268 272anti-parallel
Strand 4
B
134 141anti-parallel
Strand 5
B
164 168anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
153 155anti-parallel
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