Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TDK entry

There are 7 chains in PDB entry 8TDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 166	THR 731
B	THR 166	THR 731
C	THR 166	THR 731
D	THR 166	THR 731
E	THR 166	THR 731
F	THR 166	THR 731
G	THR 166	THR 731

There are105 helices in PDB entry 8TDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	166	188	Right-handed alpha
Helix 2	AA2	A	188	193	Right-handed alpha
Helix 3	AA3	A	201	232	Right-handed alpha
Helix 4	AA4	A	236	267	Right-handed alpha
Helix 5	AA5	A	274	334	Right-handed alpha
Helix 6	AA6	A	388	396	Right-handed alpha
Helix 7	AA7	A	433	443	Right-handed alpha
Helix 8	AA8	A	451	459	Right-handed alpha
Helix 9	AA9	A	460	468	Right-handed alpha
Helix 10	AB1	A	482	533	Right-handed alpha
Helix 11	AB2	A	537	555	Right-handed alpha
Helix 12	AB3	A	555	571	Right-handed alpha
Helix 13	AB4	A	612	616	Right-handed alpha
Helix 14	AB5	A	642	659	Right-handed alpha
Helix 15	AB6	A	695	718	Right-handed alpha
Helix 16	AB7	B	167	188	Right-handed alpha
Helix 17	AB8	B	188	193	Right-handed alpha
Helix 18	AB9	B	201	232	Right-handed alpha
Helix 19	AC1	B	236	267	Right-handed alpha
Helix 20	AC2	B	274	334	Right-handed alpha
Helix 21	AC3	B	388	396	Right-handed alpha
Helix 22	AC4	B	433	443	Right-handed alpha
Helix 23	AC5	B	451	459	Right-handed alpha
Helix 24	AC6	B	460	468	Right-handed alpha
Helix 25	AC7	B	482	533	Right-handed alpha
Helix 26	AC8	B	537	555	Right-handed alpha
Helix 27	AC9	B	555	571	Right-handed alpha
Helix 28	AD1	B	612	616	Right-handed alpha
Helix 29	AD2	B	642	659	Right-handed alpha
Helix 30	AD3	B	695	718	Right-handed alpha
Helix 31	AD4	C	167	188	Right-handed alpha
Helix 32	AD5	C	188	193	Right-handed alpha
Helix 33	AD6	C	201	232	Right-handed alpha
Helix 34	AD7	C	236	267	Right-handed alpha
Helix 35	AD8	C	274	334	Right-handed alpha
Helix 36	AD9	C	388	396	Right-handed alpha
Helix 37	AE1	C	433	443	Right-handed alpha
Helix 38	AE2	C	451	459	Right-handed alpha
Helix 39	AE3	C	460	468	Right-handed alpha
Helix 40	AE4	C	482	533	Right-handed alpha
Helix 41	AE5	C	537	555	Right-handed alpha
Helix 42	AE6	C	555	571	Right-handed alpha
Helix 43	AE7	C	612	616	Right-handed alpha
Helix 44	AE8	C	642	659	Right-handed alpha
Helix 45	AE9	C	695	718	Right-handed alpha
Helix 46	AF1	D	167	188	Right-handed alpha
Helix 47	AF2	D	188	193	Right-handed alpha
Helix 48	AF3	D	201	232	Right-handed alpha
Helix 49	AF4	D	236	267	Right-handed alpha
Helix 50	AF5	D	274	334	Right-handed alpha
Helix 51	AF6	D	388	396	Right-handed alpha
Helix 52	AF7	D	433	443	Right-handed alpha
Helix 53	AF8	D	451	459	Right-handed alpha
Helix 54	AF9	D	460	468	Right-handed alpha
Helix 55	AG1	D	482	533	Right-handed alpha
Helix 56	AG2	D	537	555	Right-handed alpha
Helix 57	AG3	D	555	571	Right-handed alpha
Helix 58	AG4	D	612	616	Right-handed alpha
Helix 59	AG5	D	642	659	Right-handed alpha
Helix 60	AG6	D	695	718	Right-handed alpha
Helix 61	AG7	E	167	188	Right-handed alpha
Helix 62	AG8	E	188	193	Right-handed alpha
Helix 63	AG9	E	201	232	Right-handed alpha
Helix 64	AH1	E	236	267	Right-handed alpha
Helix 65	AH2	E	274	334	Right-handed alpha
Helix 66	AH3	E	388	396	Right-handed alpha
Helix 67	AH4	E	433	443	Right-handed alpha
Helix 68	AH5	E	451	459	Right-handed alpha
Helix 69	AH6	E	460	468	Right-handed alpha
Helix 70	AH7	E	482	533	Right-handed alpha
Helix 71	AH8	E	537	555	Right-handed alpha
Helix 72	AH9	E	555	571	Right-handed alpha
Helix 73	AI1	E	612	616	Right-handed alpha
Helix 74	AI2	E	642	659	Right-handed alpha
Helix 75	AI3	E	695	718	Right-handed alpha
Helix 76	AI4	F	167	188	Right-handed alpha
Helix 77	AI5	F	188	193	Right-handed alpha
Helix 78	AI6	F	201	232	Right-handed alpha
Helix 79	AI7	F	236	267	Right-handed alpha
Helix 80	AI8	F	274	334	Right-handed alpha
Helix 81	AI9	F	388	396	Right-handed alpha
Helix 82	AJ1	F	433	443	Right-handed alpha
Helix 83	AJ2	F	451	459	Right-handed alpha
Helix 84	AJ3	F	460	468	Right-handed alpha
Helix 85	AJ4	F	482	533	Right-handed alpha
Helix 86	AJ5	F	537	555	Right-handed alpha
Helix 87	AJ6	F	555	571	Right-handed alpha
Helix 88	AJ7	F	612	616	Right-handed alpha
Helix 89	AJ8	F	642	659	Right-handed alpha
Helix 90	AJ9	F	695	718	Right-handed alpha
Helix 91	AK1	G	167	188	Right-handed alpha
Helix 92	AK2	G	188	193	Right-handed alpha
Helix 93	AK3	G	201	232	Right-handed alpha
Helix 94	AK4	G	236	267	Right-handed alpha
Helix 95	AK5	G	274	334	Right-handed alpha
Helix 96	AK6	G	388	396	Right-handed alpha
Helix 97	AK7	G	433	443	Right-handed alpha
Helix 98	AK8	G	451	459	Right-handed alpha
Helix 99	AK9	G	460	468	Right-handed alpha
Helix 100	AL1	G	482	533	Right-handed alpha
Helix 101	AL2	G	537	555	Right-handed alpha
Helix 102	AL3	G	555	571	Right-handed alpha
Helix 103	AL4	G	612	616	Right-handed alpha
Helix 104	AL5	G	642	659	Right-handed alpha
Helix 105	AL6	G	695	718	Right-handed alpha

There are 16 sheets in PDB entry 8TDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	199	200	anti-parallel

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There are 36 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	586	593	anti-parallel
Strand 3	A	597	601	anti-parallel
Strand 4	A	607	611	anti-parallel
Strand 5	G	620	622	anti-parallel
Strand 6	G	580	583	anti-parallel
Strand 7	G	586	593	anti-parallel
Strand 8	G	597	601	anti-parallel
Strand 9	G	607	611	anti-parallel
Strand 10	F	620	622	anti-parallel
Strand 11	F	580	583	anti-parallel
Strand 12	F	586	593	anti-parallel
Strand 13	F	597	601	anti-parallel
Strand 14	F	607	611	anti-parallel
Strand 15	E	620	622	anti-parallel
Strand 16	E	580	583	anti-parallel
Strand 17	E	586	593	anti-parallel
Strand 18	E	597	601	anti-parallel
Strand 19	E	607	611	anti-parallel
Strand 20	D	620	622	anti-parallel
Strand 21	D	580	583	anti-parallel
Strand 22	D	586	593	anti-parallel
Strand 23	D	597	601	anti-parallel
Strand 24	D	607	611	anti-parallel
Strand 25	C	620	622	anti-parallel
Strand 26	C	580	583	anti-parallel
Strand 27	C	586	593	anti-parallel
Strand 28	C	597	601	anti-parallel
Strand 29	C	607	611	anti-parallel
Strand 30	B	620	622	anti-parallel
Strand 31	B	580	583	anti-parallel
Strand 32	B	586	593	anti-parallel
Strand 33	B	597	601	anti-parallel
Strand 34	B	607	611	anti-parallel
Strand 35	A	620	622	anti-parallel
Strand 36	A	580	583	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	638	first strand
Strand 2	A	680	689	anti-parallel
Strand 3	A	664	676	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	730	first strand
Strand 2	B	726	730	parallel
Strand 3	C	726	730	parallel
Strand 4	D	726	730	parallel
Strand 5	E	726	730	parallel
Strand 6	F	726	730	parallel
Strand 7	G	726	730	parallel
Strand 8	A	726	730	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	199	200	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	638	first strand
Strand 2	B	680	689	anti-parallel
Strand 3	B	664	676	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	199	200	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	638	first strand
Strand 2	C	680	689	anti-parallel
Strand 3	C	664	676	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	196	first strand
Strand 2	D	199	200	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	630	638	first strand
Strand 2	D	680	689	anti-parallel
Strand 3	D	664	676	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	196	first strand
Strand 2	E	199	200	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	630	638	first strand
Strand 2	E	680	689	anti-parallel
Strand 3	E	664	676	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	196	first strand
Strand 2	F	199	200	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	630	638	first strand
Strand 2	F	680	689	anti-parallel
Strand 3	F	664	676	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	196	first strand
Strand 2	G	199	200	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	630	638	first strand
Strand 2	G	680	689	anti-parallel
Strand 3	G	664	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDK