Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TDM entry

There are 7 chains in PDB entry 8TDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 166	THR 731
B	THR 166	THR 731
C	THR 166	THR 731
D	THR 166	THR 731
E	THR 166	THR 731
F	THR 166	THR 731
G	THR 166	THR 731

There are 98 helices in PDB entry 8TDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	166	188	Right-handed alpha
Helix 2	AA2	A	190	193	Right-handed 310
Helix 3	AA3	A	201	232	Right-handed alpha
Helix 4	AA4	A	236	268	Right-handed alpha
Helix 5	AA5	A	274	334	Right-handed alpha
Helix 6	AA6	A	388	396	Right-handed alpha
Helix 7	AA7	A	433	443	Right-handed alpha
Helix 8	AA8	A	451	459	Right-handed alpha
Helix 9	AA9	A	460	468	Right-handed alpha
Helix 10	AB1	A	482	534	Right-handed alpha
Helix 11	AB2	A	537	571	Right-handed alpha
Helix 12	AB3	A	612	616	Right-handed alpha
Helix 13	AB4	A	642	659	Right-handed alpha
Helix 14	AB5	A	695	718	Right-handed alpha
Helix 15	AB6	B	167	188	Right-handed alpha
Helix 16	AB7	B	190	193	Right-handed 310
Helix 17	AB8	B	201	232	Right-handed alpha
Helix 18	AB9	B	236	268	Right-handed alpha
Helix 19	AC1	B	274	334	Right-handed alpha
Helix 20	AC2	B	388	396	Right-handed alpha
Helix 21	AC3	B	433	443	Right-handed alpha
Helix 22	AC4	B	451	459	Right-handed alpha
Helix 23	AC5	B	460	468	Right-handed alpha
Helix 24	AC6	B	482	534	Right-handed alpha
Helix 25	AC7	B	537	571	Right-handed alpha
Helix 26	AC8	B	612	616	Right-handed alpha
Helix 27	AC9	B	642	659	Right-handed alpha
Helix 28	AD1	B	695	718	Right-handed alpha
Helix 29	AD2	C	167	188	Right-handed alpha
Helix 30	AD3	C	190	193	Right-handed 310
Helix 31	AD4	C	201	232	Right-handed alpha
Helix 32	AD5	C	236	268	Right-handed alpha
Helix 33	AD6	C	274	334	Right-handed alpha
Helix 34	AD7	C	388	396	Right-handed alpha
Helix 35	AD8	C	433	443	Right-handed alpha
Helix 36	AD9	C	451	459	Right-handed alpha
Helix 37	AE1	C	460	468	Right-handed alpha
Helix 38	AE2	C	482	534	Right-handed alpha
Helix 39	AE3	C	537	571	Right-handed alpha
Helix 40	AE4	C	612	616	Right-handed alpha
Helix 41	AE5	C	642	659	Right-handed alpha
Helix 42	AE6	C	695	718	Right-handed alpha
Helix 43	AE7	D	167	188	Right-handed alpha
Helix 44	AE8	D	190	193	Right-handed 310
Helix 45	AE9	D	201	232	Right-handed alpha
Helix 46	AF1	D	236	268	Right-handed alpha
Helix 47	AF2	D	274	334	Right-handed alpha
Helix 48	AF3	D	388	396	Right-handed alpha
Helix 49	AF4	D	433	443	Right-handed alpha
Helix 50	AF5	D	451	459	Right-handed alpha
Helix 51	AF6	D	460	468	Right-handed alpha
Helix 52	AF7	D	482	534	Right-handed alpha
Helix 53	AF8	D	537	571	Right-handed alpha
Helix 54	AF9	D	612	616	Right-handed alpha
Helix 55	AG1	D	642	659	Right-handed alpha
Helix 56	AG2	D	695	718	Right-handed alpha
Helix 57	AG3	E	167	188	Right-handed alpha
Helix 58	AG4	E	190	193	Right-handed 310
Helix 59	AG5	E	201	232	Right-handed alpha
Helix 60	AG6	E	236	268	Right-handed alpha
Helix 61	AG7	E	274	334	Right-handed alpha
Helix 62	AG8	E	388	396	Right-handed alpha
Helix 63	AG9	E	433	443	Right-handed alpha
Helix 64	AH1	E	451	459	Right-handed alpha
Helix 65	AH2	E	460	468	Right-handed alpha
Helix 66	AH3	E	482	534	Right-handed alpha
Helix 67	AH4	E	537	571	Right-handed alpha
Helix 68	AH5	E	612	616	Right-handed alpha
Helix 69	AH6	E	642	659	Right-handed alpha
Helix 70	AH7	E	695	718	Right-handed alpha
Helix 71	AH8	F	167	188	Right-handed alpha
Helix 72	AH9	F	190	193	Right-handed 310
Helix 73	AI1	F	201	232	Right-handed alpha
Helix 74	AI2	F	236	268	Right-handed alpha
Helix 75	AI3	F	274	334	Right-handed alpha
Helix 76	AI4	F	388	396	Right-handed alpha
Helix 77	AI5	F	433	443	Right-handed alpha
Helix 78	AI6	F	451	459	Right-handed alpha
Helix 79	AI7	F	460	468	Right-handed alpha
Helix 80	AI8	F	482	534	Right-handed alpha
Helix 81	AI9	F	537	571	Right-handed alpha
Helix 82	AJ1	F	612	616	Right-handed alpha
Helix 83	AJ2	F	642	659	Right-handed alpha
Helix 84	AJ3	F	695	718	Right-handed alpha
Helix 85	AJ4	G	167	188	Right-handed alpha
Helix 86	AJ5	G	190	193	Right-handed 310
Helix 87	AJ6	G	201	232	Right-handed alpha
Helix 88	AJ7	G	236	268	Right-handed alpha
Helix 89	AJ8	G	274	334	Right-handed alpha
Helix 90	AJ9	G	388	396	Right-handed alpha
Helix 91	AK1	G	433	443	Right-handed alpha
Helix 92	AK2	G	451	459	Right-handed alpha
Helix 93	AK3	G	460	468	Right-handed alpha
Helix 94	AK4	G	482	534	Right-handed alpha
Helix 95	AK5	G	537	571	Right-handed alpha
Helix 96	AK6	G	612	616	Right-handed alpha
Helix 97	AK7	G	642	659	Right-handed alpha
Helix 98	AK8	G	695	718	Right-handed alpha

There are 16 sheets in PDB entry 8TDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	199	200	anti-parallel

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There are 36 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	586	593	anti-parallel
Strand 3	A	597	602	anti-parallel
Strand 4	A	607	611	anti-parallel
Strand 5	G	620	622	anti-parallel
Strand 6	G	580	583	anti-parallel
Strand 7	G	586	593	anti-parallel
Strand 8	G	597	602	anti-parallel
Strand 9	G	607	611	anti-parallel
Strand 10	F	620	622	anti-parallel
Strand 11	F	580	583	anti-parallel
Strand 12	F	586	593	anti-parallel
Strand 13	F	597	602	anti-parallel
Strand 14	F	607	611	anti-parallel
Strand 15	E	620	622	anti-parallel
Strand 16	E	580	583	anti-parallel
Strand 17	E	586	593	anti-parallel
Strand 18	E	597	602	anti-parallel
Strand 19	E	607	611	anti-parallel
Strand 20	D	620	622	anti-parallel
Strand 21	D	580	583	anti-parallel
Strand 22	D	586	593	anti-parallel
Strand 23	D	597	602	anti-parallel
Strand 24	D	607	611	anti-parallel
Strand 25	C	620	622	anti-parallel
Strand 26	C	580	583	anti-parallel
Strand 27	C	586	593	anti-parallel
Strand 28	C	597	602	anti-parallel
Strand 29	C	607	611	anti-parallel
Strand 30	B	620	622	anti-parallel
Strand 31	B	580	583	anti-parallel
Strand 32	B	586	593	anti-parallel
Strand 33	B	597	602	anti-parallel
Strand 34	B	607	611	anti-parallel
Strand 35	A	620	622	anti-parallel
Strand 36	A	580	583	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	638	first strand
Strand 2	A	680	689	anti-parallel
Strand 3	A	664	676	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	731	first strand
Strand 2	B	726	731	parallel
Strand 3	C	726	731	parallel
Strand 4	D	726	731	parallel
Strand 5	E	726	731	parallel
Strand 6	F	726	731	parallel
Strand 7	G	726	731	parallel
Strand 8	A	726	731	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	199	200	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	638	first strand
Strand 2	B	680	689	anti-parallel
Strand 3	B	664	676	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	199	200	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	638	first strand
Strand 2	C	680	689	anti-parallel
Strand 3	C	664	676	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	196	first strand
Strand 2	D	199	200	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	630	638	first strand
Strand 2	D	680	689	anti-parallel
Strand 3	D	664	676	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	196	first strand
Strand 2	E	199	200	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	630	638	first strand
Strand 2	E	680	689	anti-parallel
Strand 3	E	664	676	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	196	first strand
Strand 2	F	199	200	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	630	638	first strand
Strand 2	F	680	689	anti-parallel
Strand 3	F	664	676	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	196	first strand
Strand 2	G	199	200	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	630	638	first strand
Strand 2	G	680	689	anti-parallel
Strand 3	G	664	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDM