Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TDR entry

There are 6 chains in PDB entry 8TDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 626	VAL 912
B	GLY 626	VAL 912
C	GLY 626	VAL 912
E	GLU 629	VAL 912
H	ALA 628	VAL 912
F	ALA 628	ARG 736

There are 76 helices in PDB entry 8TDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	644	653	Right-handed alpha
Helix 2	AA2	A	666	677	Right-handed alpha
Helix 3	AA3	A	686	690	Right-handed 310
Helix 4	AA4	A	691	699	Right-handed alpha
Helix 5	AA5	A	729	742	Right-handed alpha
Helix 6	AA6	A	762	774	Right-handed alpha
Helix 7	AA7	A	783	785	Right-handed 310
Helix 8	AA8	A	814	819	Right-handed 310
Helix 9	AA9	A	860	869	Right-handed alpha
Helix 10	AB1	A	881	891	Right-handed alpha
Helix 11	AB2	A	894	903	Right-handed alpha
Helix 12	AB3	A	904	908	Right-handed 310
Helix 13	AB4	B	644	653	Right-handed alpha
Helix 14	AB5	B	666	678	Right-handed alpha
Helix 15	AB6	B	686	690	Right-handed 310
Helix 16	AB7	B	691	699	Right-handed alpha
Helix 17	AB8	B	729	742	Right-handed alpha
Helix 18	AB9	B	762	774	Right-handed alpha
Helix 19	AC1	B	783	785	Right-handed 310
Helix 20	AC2	B	814	819	Right-handed 310
Helix 21	AC3	B	860	869	Right-handed alpha
Helix 22	AC4	B	881	891	Right-handed alpha
Helix 23	AC5	B	894	903	Right-handed alpha
Helix 24	AC6	B	904	908	Right-handed 310
Helix 25	AC7	C	644	653	Right-handed alpha
Helix 26	AC8	C	666	677	Right-handed alpha
Helix 27	AC9	C	686	690	Right-handed 310
Helix 28	AD1	C	691	699	Right-handed alpha
Helix 29	AD2	C	729	742	Right-handed alpha
Helix 30	AD3	C	762	774	Right-handed alpha
Helix 31	AD4	C	783	785	Right-handed 310
Helix 32	AD5	C	814	819	Right-handed 310
Helix 33	AD6	C	860	869	Right-handed alpha
Helix 34	AD7	C	881	891	Right-handed alpha
Helix 35	AD8	C	894	903	Right-handed alpha
Helix 36	AD9	C	904	908	Right-handed 310
Helix 37	AE1	E	643	654	Right-handed alpha
Helix 38	AE2	E	688	690	Right-handed 310
Helix 39	AE3	E	691	699	Right-handed alpha
Helix 40	AE4	E	727	742	Right-handed alpha
Helix 41	AE5	E	762	773	Right-handed alpha
Helix 42	AE6	E	895	903	Right-handed alpha
Helix 43	AE7	E	904	908	Right-handed 310
Helix 44	AE8	H	644	653	Right-handed alpha
Helix 45	AE9	H	688	690	Right-handed 310
Helix 46	AF1	H	691	699	Right-handed alpha
Helix 47	AF2	H	727	742	Right-handed alpha
Helix 48	AF3	H	762	773	Right-handed alpha
Helix 49	AF4	H	895	903	Right-handed alpha
Helix 50	AF5	H	904	908	Right-handed 310
Helix 51	AF6	F	644	654	Right-handed alpha
Helix 52	AF7	F	688	690	Right-handed 310
Helix 53	AF8	F	691	699	Right-handed alpha
Helix 54	AF9	F	727	742	Right-handed alpha
Helix 55	AG1	F	762	774	Right-handed alpha
Helix 56	AG2	F	895	903	Right-handed alpha
Helix 57	AG3	F	904	908	Right-handed 310
Helix 58	AG4	D	644	653	Right-handed alpha
Helix 59	AG5	D	666	678	Right-handed alpha
Helix 60	AG6	D	686	690	Right-handed 310
Helix 61	AG7	D	691	699	Right-handed alpha
Helix 62	AG8	D	729	742	Right-handed alpha
Helix 63	AG9	D	762	774	Right-handed alpha
Helix 64	AH1	D	783	785	Right-handed 310
Helix 65	AH2	D	814	819	Right-handed 310
Helix 66	AH3	D	860	869	Right-handed alpha
Helix 67	AH4	D	881	892	Right-handed alpha
Helix 68	AH5	D	894	903	Right-handed alpha
Helix 69	AH6	D	904	908	Right-handed 310
Helix 70	AH7	G	644	653	Right-handed alpha
Helix 71	AH8	G	688	690	Right-handed 310
Helix 72	AH9	G	691	699	Right-handed alpha
Helix 73	AI1	G	728	742	Right-handed alpha
Helix 74	AI2	G	762	773	Right-handed alpha
Helix 75	AI3	G	895	903	Right-handed alpha
Helix 76	AI4	G	904	908	Right-handed 310

There are 14 sheets in PDB entry 8TDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	657	663	parallel
Strand 3	A	634	639	parallel
Strand 4	A	703	706	parallel
Strand 5	A	752	758	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	825	first strand
Strand 2	A	850	852	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	683	first strand
Strand 2	B	657	663	parallel
Strand 3	B	634	639	parallel
Strand 4	B	703	706	parallel
Strand 5	B	752	758	parallel
Strand 6	B	791	796	anti-parallel
Strand 7	B	778	781	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	B	830	831	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	825	first strand
Strand 2	B	850	852	anti-parallel
Strand 3	B	855	857	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	683	first strand
Strand 2	C	657	663	parallel
Strand 3	C	634	639	parallel
Strand 4	C	703	706	parallel
Strand 5	C	752	758	parallel
Strand 6	C	791	796	anti-parallel
Strand 7	C	778	781	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	789	first strand
Strand 2	C	830	831	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	825	first strand
Strand 2	C	850	852	anti-parallel
Strand 3	C	855	857	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	681	686	first strand
Strand 2	E	657	664	parallel
Strand 3	E	634	638	parallel
Strand 4	E	703	707	parallel
Strand 5	E	752	758	parallel
Strand 6	E	792	796	anti-parallel
Strand 7	E	778	780	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	676	678	first strand
Strand 2	H	681	686	anti-parallel
Strand 3	H	657	664	parallel
Strand 4	H	634	638	parallel
Strand 5	H	703	707	parallel
Strand 6	H	752	758	parallel
Strand 7	H	792	796	anti-parallel
Strand 8	H	778	780	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	681	686	first strand
Strand 2	F	657	664	parallel
Strand 3	F	634	638	parallel
Strand 4	F	703	707	parallel
Strand 5	F	752	758	parallel
Strand 6	F	792	796	anti-parallel
Strand 7	F	778	780	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	683	first strand
Strand 2	D	657	663	parallel
Strand 3	D	634	639	parallel
Strand 4	D	703	706	parallel
Strand 5	D	752	758	parallel
Strand 6	D	791	796	anti-parallel
Strand 7	D	778	781	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	825	first strand
Strand 2	D	850	852	anti-parallel
Strand 3	D	855	857	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	681	686	first strand
Strand 2	G	657	664	parallel
Strand 3	G	634	640	parallel
Strand 4	G	703	707	parallel
Strand 5	G	752	758	parallel
Strand 6	G	792	796	anti-parallel
Strand 7	G	778	779	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDR