Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TDV entry

There are 6 chains in PDB entry 8TDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 114	THR 579
B	ASP 113	THR 579
E	THR 114	THR 579
F	ASP 113	THR 579
J	C 6	C 11
K	C 6	C 12

There are103 helices in PDB entry 8TDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	137	Right-handed alpha
Helix 2	AA2	A	138	143	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	163	182	Right-handed alpha
Helix 5	AA5	A	192	205	Right-handed alpha
Helix 6	AA6	A	214	220	Right-handed alpha
Helix 7	AA7	A	220	226	Right-handed alpha
Helix 8	AA8	A	232	248	Right-handed alpha
Helix 9	AA9	A	249	257	Right-handed alpha
Helix 10	AB1	A	260	274	Right-handed alpha
Helix 11	AB2	A	291	299	Right-handed 310
Helix 12	AB3	A	309	324	Right-handed alpha
Helix 13	AB4	A	330	337	Right-handed alpha
Helix 14	AB5	A	355	373	Right-handed alpha
Helix 15	AB6	A	376	393	Right-handed alpha
Helix 16	AB7	A	402	404	Right-handed 310
Helix 17	AB8	A	410	414	Right-handed 310
Helix 18	AB9	A	415	421	Right-handed alpha
Helix 19	AC1	A	424	432	Right-handed alpha
Helix 20	AC2	A	435	437	Right-handed 310
Helix 21	AC3	A	438	450	Right-handed alpha
Helix 22	AC4	A	471	482	Right-handed alpha
Helix 23	AC5	A	559	576	Right-handed alpha
Helix 24	AC6	B	129	137	Right-handed alpha
Helix 25	AC7	B	138	143	Right-handed alpha
Helix 26	AC8	B	144	147	Right-handed 310
Helix 27	AC9	B	150	156	Right-handed 310
Helix 28	AD1	B	163	186	Right-handed alpha
Helix 29	AD2	B	187	190	Right-handed 310
Helix 30	AD3	B	192	205	Right-handed alpha
Helix 31	AD4	B	214	220	Right-handed alpha
Helix 32	AD5	B	221	226	Right-handed alpha
Helix 33	AD6	B	232	249	Right-handed alpha
Helix 34	AD7	B	249	257	Right-handed alpha
Helix 35	AD8	B	260	273	Right-handed alpha
Helix 36	AD9	B	291	295	Right-handed 310
Helix 37	AE1	B	296	300	Right-handed 310
Helix 38	AE2	B	309	324	Right-handed alpha
Helix 39	AE3	B	330	337	Right-handed alpha
Helix 40	AE4	B	355	373	Right-handed alpha
Helix 41	AE5	B	376	394	Right-handed alpha
Helix 42	AE6	B	402	404	Right-handed 310
Helix 43	AE7	B	409	414	Right-handed 310
Helix 44	AE8	B	415	420	Right-handed alpha
Helix 45	AE9	B	421	423	Right-handed 310
Helix 46	AF1	B	424	432	Right-handed alpha
Helix 47	AF2	B	438	450	Right-handed alpha
Helix 48	AF3	B	471	474	Right-handed 310
Helix 49	AF4	B	475	484	Right-handed alpha
Helix 50	AF5	B	493	497	Right-handed alpha
Helix 51	AF6	B	558	577	Right-handed alpha
Helix 52	AF7	E	129	137	Right-handed alpha
Helix 53	AF8	E	138	143	Right-handed alpha
Helix 54	AF9	E	144	147	Right-handed 310
Helix 55	AG1	E	163	182	Right-handed alpha
Helix 56	AG2	E	192	204	Right-handed alpha
Helix 57	AG3	E	215	220	Right-handed alpha
Helix 58	AG4	E	221	226	Right-handed alpha
Helix 59	AG5	E	232	249	Right-handed alpha
Helix 60	AG6	E	250	257	Right-handed alpha
Helix 61	AG7	E	260	274	Right-handed alpha
Helix 62	AG8	E	291	300	Right-handed 310
Helix 63	AG9	E	309	324	Right-handed alpha
Helix 64	AH1	E	330	337	Right-handed alpha
Helix 65	AH2	E	355	373	Right-handed alpha
Helix 66	AH3	E	376	393	Right-handed alpha
Helix 67	AH4	E	401	405	Right-handed 310
Helix 68	AH5	E	410	414	Right-handed 310
Helix 69	AH6	E	415	421	Right-handed alpha
Helix 70	AH7	E	424	432	Right-handed alpha
Helix 71	AH8	E	438	450	Right-handed alpha
Helix 72	AH9	E	471	483	Right-handed alpha
Helix 73	AI1	E	530	535	Right-handed alpha
Helix 74	AI2	E	559	576	Right-handed alpha
Helix 75	AI3	F	129	137	Right-handed alpha
Helix 76	AI4	F	138	143	Right-handed alpha
Helix 77	AI5	F	144	147	Right-handed 310
Helix 78	AI6	F	150	156	Right-handed 310
Helix 79	AI7	F	163	186	Right-handed alpha
Helix 80	AI8	F	187	190	Right-handed 310
Helix 81	AI9	F	192	204	Right-handed alpha
Helix 82	AJ1	F	214	220	Right-handed alpha
Helix 83	AJ2	F	221	226	Right-handed alpha
Helix 84	AJ3	F	232	249	Right-handed alpha
Helix 85	AJ4	F	249	258	Right-handed alpha
Helix 86	AJ5	F	260	274	Right-handed alpha
Helix 87	AJ6	F	291	295	Right-handed 310
Helix 88	AJ7	F	296	300	Right-handed 310
Helix 89	AJ8	F	309	324	Right-handed alpha
Helix 90	AJ9	F	330	337	Right-handed alpha
Helix 91	AK1	F	355	374	Right-handed alpha
Helix 92	AK2	F	377	393	Right-handed alpha
Helix 93	AK3	F	394	397	Right-handed 310
Helix 94	AK4	F	402	404	Right-handed 310
Helix 95	AK5	F	410	414	Right-handed 310
Helix 96	AK6	F	415	420	Right-handed alpha
Helix 97	AK7	F	421	423	Right-handed 310
Helix 98	AK8	F	424	432	Right-handed alpha
Helix 99	AK9	F	435	437	Right-handed 310
Helix 100	AL1	F	438	450	Right-handed alpha
Helix 101	AL2	F	472	474	Right-handed 310
Helix 102	AL3	F	475	484	Right-handed alpha
Helix 103	AL4	F	559	576	Right-handed alpha

There are 15 sheets in PDB entry 8TDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	342	first strand
Strand 2	A	347	351	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	406	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	549	553	anti-parallel
Strand 3	A	499	503	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	342	first strand
Strand 2	B	347	351	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	550	554	anti-parallel
Strand 3	B	498	500	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	342	first strand
Strand 2	E	347	351	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	460	first strand
Strand 2	E	549	553	anti-parallel
Strand 3	E	499	503	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	120	first strand
Strand 2	F	124	128	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	342	first strand
Strand 2	F	347	351	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	400	first strand
Strand 2	F	406	407	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	501	502	first strand
Strand 2	F	550	551	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDV