Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TDW entry

There are 6 chains in PDB entry 8TDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 115	THR 602
B	MET 115	THR 602
E	MET 115	THR 602
F	MET 115	THR 602
J	C 6	C 11
K	C 6	C 11

There are109 helices in PDB entry 8TDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	137	Right-handed alpha
Helix 2	AA2	A	138	143	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	150	156	Right-handed 310
Helix 5	AA5	A	163	186	Right-handed alpha
Helix 6	AA6	A	192	205	Right-handed alpha
Helix 7	AA7	A	213	217	Right-handed 310
Helix 8	AA8	A	220	226	Right-handed alpha
Helix 9	AA9	A	232	248	Right-handed alpha
Helix 10	AB1	A	249	257	Right-handed alpha
Helix 11	AB2	A	260	274	Right-handed alpha
Helix 12	AB3	A	291	300	Right-handed 310
Helix 13	AB4	A	309	324	Right-handed alpha
Helix 14	AB5	A	330	338	Right-handed alpha
Helix 15	AB6	A	355	373	Right-handed alpha
Helix 16	AB7	A	376	393	Right-handed alpha
Helix 17	AB8	A	402	404	Right-handed 310
Helix 18	AB9	A	410	414	Right-handed 310
Helix 19	AC1	A	415	420	Right-handed alpha
Helix 20	AC2	A	424	432	Right-handed alpha
Helix 21	AC3	A	435	437	Right-handed 310
Helix 22	AC4	A	438	450	Right-handed alpha
Helix 23	AC5	A	469	474	Right-handed 310
Helix 24	AC6	A	475	483	Right-handed alpha
Helix 25	AC7	A	532	536	Right-handed 310
Helix 26	AC8	A	558	574	Right-handed alpha
Helix 27	AC9	A	583	588	Right-handed alpha
Helix 28	AD1	B	129	137	Right-handed alpha
Helix 29	AD2	B	138	143	Right-handed alpha
Helix 30	AD3	B	144	147	Right-handed 310
Helix 31	AD4	B	150	154	Right-handed 310
Helix 32	AD5	B	163	186	Right-handed alpha
Helix 33	AD6	B	192	206	Right-handed alpha
Helix 34	AD7	B	214	220	Right-handed alpha
Helix 35	AD8	B	221	226	Right-handed alpha
Helix 36	AD9	B	232	248	Right-handed alpha
Helix 37	AE1	B	249	258	Right-handed alpha
Helix 38	AE2	B	260	274	Right-handed alpha
Helix 39	AE3	B	291	300	Right-handed 310
Helix 40	AE4	B	309	324	Right-handed alpha
Helix 41	AE5	B	331	336	Right-handed alpha
Helix 42	AE6	B	352	354	Right-handed 310
Helix 43	AE7	B	355	373	Right-handed alpha
Helix 44	AE8	B	378	393	Right-handed alpha
Helix 45	AE9	B	402	404	Right-handed 310
Helix 46	AF1	B	410	414	Right-handed 310
Helix 47	AF2	B	415	421	Right-handed alpha
Helix 48	AF3	B	424	432	Right-handed alpha
Helix 49	AF4	B	435	437	Right-handed 310
Helix 50	AF5	B	438	450	Right-handed alpha
Helix 51	AF6	B	474	481	Right-handed alpha
Helix 52	AF7	B	494	498	Right-handed 310
Helix 53	AF8	B	558	576	Right-handed alpha
Helix 54	AF9	B	583	588	Right-handed 310
Helix 55	AG1	B	595	600	Right-handed alpha
Helix 56	AG2	E	129	137	Right-handed alpha
Helix 57	AG3	E	141	146	Right-handed alpha
Helix 58	AG4	E	150	154	Right-handed 310
Helix 59	AG5	E	163	186	Right-handed alpha
Helix 60	AG6	E	187	190	Right-handed 310
Helix 61	AG7	E	192	204	Right-handed alpha
Helix 62	AG8	E	214	220	Right-handed alpha
Helix 63	AG9	E	221	226	Right-handed alpha
Helix 64	AH1	E	232	249	Right-handed alpha
Helix 65	AH2	E	250	257	Right-handed alpha
Helix 66	AH3	E	260	274	Right-handed alpha
Helix 67	AH4	E	309	324	Right-handed alpha
Helix 68	AH5	E	330	337	Right-handed alpha
Helix 69	AH6	E	355	373	Right-handed alpha
Helix 70	AH7	E	377	393	Right-handed alpha
Helix 71	AH8	E	394	396	Right-handed 310
Helix 72	AH9	E	402	404	Right-handed 310
Helix 73	AI1	E	411	414	Right-handed 310
Helix 74	AI2	E	415	420	Right-handed alpha
Helix 75	AI3	E	424	432	Right-handed alpha
Helix 76	AI4	E	438	450	Right-handed alpha
Helix 77	AI5	E	469	482	Right-handed alpha
Helix 78	AI6	E	558	576	Right-handed alpha
Helix 79	AI7	E	583	588	Right-handed alpha
Helix 80	AI8	E	591	594	Right-handed 310
Helix 81	AI9	E	595	600	Right-handed alpha
Helix 82	AJ1	F	129	137	Right-handed alpha
Helix 83	AJ2	F	138	144	Right-handed alpha
Helix 84	AJ3	F	145	147	Right-handed 310
Helix 85	AJ4	F	152	157	Right-handed alpha
Helix 86	AJ5	F	163	186	Right-handed alpha
Helix 87	AJ6	F	187	190	Right-handed 310
Helix 88	AJ7	F	192	205	Right-handed alpha
Helix 89	AJ8	F	206	208	Right-handed 310
Helix 90	AJ9	F	214	221	Right-handed alpha
Helix 91	AK1	F	221	226	Right-handed alpha
Helix 92	AK2	F	232	249	Right-handed alpha
Helix 93	AK3	F	250	256	Right-handed alpha
Helix 94	AK4	F	260	272	Right-handed alpha
Helix 95	AK5	F	311	324	Right-handed alpha
Helix 96	AK6	F	330	337	Right-handed alpha
Helix 97	AK7	F	355	376	Right-handed alpha
Helix 98	AK8	F	376	393	Right-handed alpha
Helix 99	AK9	F	394	397	Right-handed 310
Helix 100	AL1	F	401	405	Right-handed 310
Helix 101	AL2	F	408	412	Right-handed 310
Helix 102	AL3	F	415	421	Right-handed alpha
Helix 103	AL4	F	425	433	Right-handed alpha
Helix 104	AL5	F	435	437	Right-handed 310
Helix 105	AL6	F	438	450	Right-handed alpha
Helix 106	AL7	F	475	482	Right-handed alpha
Helix 107	AL8	F	558	577	Right-handed alpha
Helix 108	AL9	F	583	588	Right-handed alpha
Helix 109	AM1	F	590	595	Right-handed alpha

There are 15 sheets in PDB entry 8TDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	124	125	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	520	521	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	406	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	549	554	anti-parallel
Strand 3	A	498	503	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	124	127	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	347	350	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	548	554	anti-parallel
Strand 3	B	499	504	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	341	343	first strand
Strand 2	E	346	348	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	398	400	first strand
Strand 2	E	406	408	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	456	first strand
Strand 2	E	553	554	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	504	first strand
Strand 2	E	548	551	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	343	first strand
Strand 2	F	346	351	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	458	first strand
Strand 2	F	552	554	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	502	503	first strand
Strand 2	F	549	550	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TDW