Analysis of interatomic Contacts of Structural Units in PDB entry:
8TEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TEB entry

There are 2 chains in PDB entry 8TEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 306
B
 MET 1LEU 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8TEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
59 71Right-handed alpha
Helix 3
AA3
A
93 110Right-handed alpha
Helix 4
AA4
A
115 132Right-handed alpha
Helix 5
AA5
A
136 145Right-handed alpha
Helix 6
AA6
A
173 188Right-handed alpha
Helix 7
AA7
A
188 212Right-handed alpha
Helix 8
AA8
A
214 232Right-handed alpha
Helix 9
AA9
A
236 249Right-handed alpha
Helix 10
AB1
A
270 272Right-handed 310
Helix 11
AB2
A
273 284Right-handed alpha
Helix 12
AB3
B
17 21Right-handed 310
Helix 13
AB4
B
59 71Right-handed alpha
Helix 14
AB5
B
93 110Right-handed alpha
Helix 15
AB6
B
115 131Right-handed alpha
Helix 16
AB7
B
136 145Right-handed alpha
Helix 17
AB8
B
173 188Right-handed alpha
Helix 18
AB9
B
188 212Right-handed alpha
Helix 19
AC1
B
214 232Right-handed alpha
Helix 20
AC2
B
236 249Right-handed alpha
Helix 21
AC3
B
270 272Right-handed 310
Helix 22
AC4
B
273 284Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8TEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
78 84parallel
Strand 4
A
24 39anti-parallel
Strand 5
A
147 150anti-parallel
Strand 6
A
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
78 84parallel
Strand 4
A
24 39anti-parallel
Strand 5
A
2 13anti-parallel
Strand 6
A
299 303anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
162 167anti-parallel
Strand 4
A
287 291anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
78 84parallel
Strand 4
B
24 39anti-parallel
Strand 5
B
147 150anti-parallel
Strand 6
B
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
43 46anti-parallel
Strand 3
B
78 84parallel
Strand 4
B
24 39anti-parallel
Strand 5
B
2 13anti-parallel
Strand 6
B
299 303anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 256first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
162 167anti-parallel
Strand 4
B
287 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il