Analysis of interatomic Contacts of Structural Units in PDB entry:
8TED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TED entry

There are 2 chains in PDB entry 8TED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LYS 517
B
 ASP 2LYS 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8TED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 15Right-handed 310
Helix 2
AA2
A
16 26Right-handed alpha
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
61 73Right-handed alpha
Helix 5
AA5
A
86 96Right-handed alpha
Helix 6
AA6
A
107 147Right-handed alpha
Helix 7
AA7
A
149 168Right-handed alpha
Helix 8
AA8
A
172 198Right-handed alpha
Helix 9
AA9
A
199 203Right-handed 310
Helix 10
AB1
A
211 213Right-handed 310
Helix 11
AB2
A
214 220Right-handed alpha
Helix 12
AB3
A
220 226Right-handed alpha
Helix 13
AB4
A
240 252Right-handed alpha
Helix 14
AB5
A
270 281Right-handed alpha
Helix 15
AB6
A
283 291Right-handed alpha
Helix 16
AB7
A
307 319Right-handed alpha
Helix 17
AB8
A
332 342Right-handed alpha
Helix 18
AB9
A
343 347Right-handed 310
Helix 19
AC1
A
357 369Right-handed alpha
Helix 20
AC2
A
369 376Right-handed alpha
Helix 21
AC3
A
378 392Right-handed alpha
Helix 22
AC4
A
393 405Right-handed alpha
Helix 23
AC5
A
456 461Right-handed 310
Helix 24
AC6
A
485 494Right-handed alpha
Helix 25
AC7
A
503 507Right-handed alpha
Helix 26
AC8
B
12 15Right-handed 310
Helix 27
AC9
B
16 26Right-handed alpha
Helix 28
AD1
B
35 46Right-handed alpha
Helix 29
AD2
B
61 73Right-handed alpha
Helix 30
AD3
B
88 96Right-handed alpha
Helix 31
AD4
B
107 120Right-handed alpha
Helix 32
AD5
B
120 147Right-handed alpha
Helix 33
AD6
B
149 168Right-handed alpha
Helix 34
AD7
B
172 198Right-handed alpha
Helix 35
AD8
B
199 203Right-handed 310
Helix 36
AD9
B
211 213Right-handed 310
Helix 37
AE1
B
214 220Right-handed alpha
Helix 38
AE2
B
220 226Right-handed alpha
Helix 39
AE3
B
240 252Right-handed alpha
Helix 40
AE4
B
270 281Right-handed alpha
Helix 41
AE5
B
283 291Right-handed alpha
Helix 42
AE6
B
307 319Right-handed alpha
Helix 43
AE7
B
332 343Right-handed alpha
Helix 44
AE8
B
344 347Right-handed 310
Helix 45
AE9
B
365 376Right-handed alpha
Helix 46
AF1
B
378 392Right-handed alpha
Helix 47
AF2
B
393 405Right-handed alpha
Helix 48
AF3
B
456 461Right-handed 310
Helix 49
AF4
B
485 494Right-handed alpha
Helix 50
AF5
B
503 507Right-handed alpha
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There are 11 sheets in PDB entry 8TED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 33first strand
Strand 2
A
4 9parallel
Strand 3
A
50 53parallel
Strand 4
A
78 82parallel
Strand 5
A
100 103parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
511 516anti-parallel
Strand 3
A
408 412anti-parallel
Strand 4
A
231 236parallel
Strand 5
A
351 356parallel
Strand 6
A
325 330parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
508 509anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
497 498anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 426first strand
Strand 2
A
478 482parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
470 474anti-parallel
Strand 3
A
451 454anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
4 9parallel
Strand 3
B
50 53parallel
Strand 4
B
78 82parallel
Strand 5
B
100 103parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 264first strand
Strand 2
B
508 516anti-parallel
Strand 3
B
408 412anti-parallel
Strand 4
B
231 236parallel
Strand 5
B
351 356parallel
Strand 6
B
325 330parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 419first strand
Strand 2
B
497 498anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 426first strand
Strand 2
B
478 482parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 441first strand
Strand 2
B
470 474anti-parallel
Strand 3
B
451 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il