Analysis of interatomic Contacts of Structural Units in PDB entry:
8TEF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TEF entry

There are 4 chains in PDB entry 8TEF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	LYS 517
B	ASP 2	LYS 517
C	ASP 2	LYS 517
D	ASP 2	LYS 517

There are112 helices in PDB entry 8TEF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	15	Right-handed 310
Helix 2	AA2	A	16	26	Right-handed alpha
Helix 3	AA3	A	35	46	Right-handed alpha
Helix 4	AA4	A	61	73	Right-handed alpha
Helix 5	AA5	A	86	96	Right-handed alpha
Helix 6	AA6	A	107	120	Right-handed alpha
Helix 7	AA7	A	120	146	Right-handed alpha
Helix 8	AA8	A	149	167	Right-handed alpha
Helix 9	AA9	A	168	170	Right-handed 310
Helix 10	AB1	A	172	198	Right-handed alpha
Helix 11	AB2	A	199	203	Right-handed 310
Helix 12	AB3	A	211	220	Right-handed alpha
Helix 13	AB4	A	220	225	Right-handed alpha
Helix 14	AB5	A	240	247	Right-handed alpha
Helix 15	AB6	A	247	252	Right-handed alpha
Helix 16	AB7	A	270	281	Right-handed alpha
Helix 17	AB8	A	283	291	Right-handed alpha
Helix 18	AB9	A	300	304	Right-handed 310
Helix 19	AC1	A	307	319	Right-handed alpha
Helix 20	AC2	A	332	342	Right-handed alpha
Helix 21	AC3	A	343	347	Right-handed 310
Helix 22	AC4	A	358	369	Right-handed alpha
Helix 23	AC5	A	369	376	Right-handed alpha
Helix 24	AC6	A	378	392	Right-handed alpha
Helix 25	AC7	A	393	405	Right-handed alpha
Helix 26	AC8	A	456	461	Right-handed 310
Helix 27	AC9	A	485	494	Right-handed alpha
Helix 28	AD1	A	503	507	Right-handed alpha
Helix 29	AD2	B	12	15	Right-handed 310
Helix 30	AD3	B	16	25	Right-handed alpha
Helix 31	AD4	B	35	46	Right-handed alpha
Helix 32	AD5	B	61	73	Right-handed alpha
Helix 33	AD6	B	86	96	Right-handed alpha
Helix 34	AD7	B	107	120	Right-handed alpha
Helix 35	AD8	B	120	146	Right-handed alpha
Helix 36	AD9	B	149	167	Right-handed alpha
Helix 37	AE1	B	168	170	Right-handed 310
Helix 38	AE2	B	172	198	Right-handed alpha
Helix 39	AE3	B	199	203	Right-handed 310
Helix 40	AE4	B	211	213	Right-handed 310
Helix 41	AE5	B	214	220	Right-handed alpha
Helix 42	AE6	B	220	225	Right-handed alpha
Helix 43	AE7	B	240	247	Right-handed alpha
Helix 44	AE8	B	247	252	Right-handed alpha
Helix 45	AE9	B	270	281	Right-handed alpha
Helix 46	AF1	B	283	291	Right-handed alpha
Helix 47	AF2	B	300	304	Right-handed 310
Helix 48	AF3	B	307	319	Right-handed alpha
Helix 49	AF4	B	332	342	Right-handed alpha
Helix 50	AF5	B	343	347	Right-handed 310
Helix 51	AF6	B	361	369	Right-handed alpha
Helix 52	AF7	B	369	376	Right-handed alpha
Helix 53	AF8	B	378	392	Right-handed alpha
Helix 54	AF9	B	393	405	Right-handed alpha
Helix 55	AG1	B	456	461	Right-handed 310
Helix 56	AG2	B	485	494	Right-handed alpha
Helix 57	AG3	B	503	507	Right-handed alpha
Helix 58	AG4	C	12	15	Right-handed 310
Helix 59	AG5	C	16	25	Right-handed alpha
Helix 60	AG6	C	35	46	Right-handed alpha
Helix 61	AG7	C	61	73	Right-handed alpha
Helix 62	AG8	C	86	96	Right-handed alpha
Helix 63	AG9	C	107	120	Right-handed alpha
Helix 64	AH1	C	120	146	Right-handed alpha
Helix 65	AH2	C	149	168	Right-handed alpha
Helix 66	AH3	C	172	196	Right-handed alpha
Helix 67	AH4	C	199	203	Right-handed 310
Helix 68	AH5	C	211	213	Right-handed 310
Helix 69	AH6	C	214	220	Right-handed alpha
Helix 70	AH7	C	220	225	Right-handed alpha
Helix 71	AH8	C	240	252	Right-handed alpha
Helix 72	AH9	C	270	281	Right-handed alpha
Helix 73	AI1	C	283	291	Right-handed alpha
Helix 74	AI2	C	307	319	Right-handed alpha
Helix 75	AI3	C	332	342	Right-handed alpha
Helix 76	AI4	C	343	347	Right-handed 310
Helix 77	AI5	C	370	376	Right-handed alpha
Helix 78	AI6	C	378	392	Right-handed alpha
Helix 79	AI7	C	393	405	Right-handed alpha
Helix 80	AI8	C	447	449	Right-handed 310
Helix 81	AI9	C	456	461	Right-handed 310
Helix 82	AJ1	C	485	494	Right-handed alpha
Helix 83	AJ2	C	503	507	Right-handed alpha
Helix 84	AJ3	D	12	15	Right-handed 310
Helix 85	AJ4	D	16	25	Right-handed alpha
Helix 86	AJ5	D	35	46	Right-handed alpha
Helix 87	AJ6	D	61	73	Right-handed alpha
Helix 88	AJ7	D	86	96	Right-handed alpha
Helix 89	AJ8	D	107	120	Right-handed alpha
Helix 90	AJ9	D	120	146	Right-handed alpha
Helix 91	AK1	D	149	167	Right-handed alpha
Helix 92	AK2	D	168	170	Right-handed 310
Helix 93	AK3	D	172	198	Right-handed alpha
Helix 94	AK4	D	199	203	Right-handed 310
Helix 95	AK5	D	211	213	Right-handed 310
Helix 96	AK6	D	214	220	Right-handed alpha
Helix 97	AK7	D	220	225	Right-handed alpha
Helix 98	AK8	D	240	247	Right-handed alpha
Helix 99	AK9	D	247	252	Right-handed alpha
Helix 100	AL1	D	270	281	Right-handed alpha
Helix 101	AL2	D	283	291	Right-handed alpha
Helix 102	AL3	D	307	319	Right-handed alpha
Helix 103	AL4	D	332	342	Right-handed alpha
Helix 104	AL5	D	343	347	Right-handed 310
Helix 105	AL6	D	358	369	Right-handed alpha
Helix 106	AL7	D	369	376	Right-handed alpha
Helix 107	AL8	D	378	392	Right-handed alpha
Helix 108	AL9	D	393	405	Right-handed alpha
Helix 109	AM1	D	447	449	Right-handed 310
Helix 110	AM2	D	456	461	Right-handed 310
Helix 111	AM3	D	485	494	Right-handed alpha
Helix 112	AM4	D	503	507	Right-handed alpha

There are 20 sheets in PDB entry 8TEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	4	9	parallel
Strand 3	A	50	53	parallel
Strand 4	A	78	82	parallel
Strand 5	A	100	103	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	264	first strand
Strand 2	A	508	516	anti-parallel
Strand 3	A	408	412	anti-parallel
Strand 4	A	231	236	parallel
Strand 5	A	351	356	parallel
Strand 6	A	325	330	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	496	498	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	478	482	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	441	first strand
Strand 2	A	470	474	anti-parallel
Strand 3	A	451	454	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	4	9	parallel
Strand 3	B	50	53	parallel
Strand 4	B	78	82	parallel
Strand 5	B	100	103	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	264	first strand
Strand 2	B	508	516	anti-parallel
Strand 3	B	408	412	anti-parallel
Strand 4	B	231	236	parallel
Strand 5	B	351	356	parallel
Strand 6	B	325	330	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	496	498	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	422	427	anti-parallel
Strand 3	B	478	482	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	441	first strand
Strand 2	B	470	474	anti-parallel
Strand 3	B	451	454	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	33	first strand
Strand 2	C	4	9	parallel
Strand 3	C	50	53	parallel
Strand 4	C	78	82	parallel
Strand 5	C	100	103	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	264	first strand
Strand 2	C	508	516	anti-parallel
Strand 3	C	408	412	anti-parallel
Strand 4	C	231	236	parallel
Strand 5	C	351	356	parallel
Strand 6	C	325	330	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	420	first strand
Strand 2	C	496	498	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	426	first strand
Strand 2	C	478	482	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	441	first strand
Strand 2	C	470	474	anti-parallel
Strand 3	C	451	454	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	33	first strand
Strand 2	D	4	9	parallel
Strand 3	D	50	53	parallel
Strand 4	D	78	82	parallel
Strand 5	D	100	103	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	264	first strand
Strand 2	D	508	516	anti-parallel
Strand 3	D	408	412	anti-parallel
Strand 4	D	231	236	parallel
Strand 5	D	351	356	parallel
Strand 6	D	325	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	496	498	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	426	first strand
Strand 2	D	478	482	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	441	first strand
Strand 2	D	470	474	anti-parallel
Strand 3	D	451	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TEF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TEF