Analysis of interatomic Contacts of Structural Units in PDB entry:
8TEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TEM entry

There are 2 chains in PDB entry 8TEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 5PRO 606
B
 PHE 5PRO 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8TEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
21 33Right-handed alpha
Helix 3
AA3
A
36 62Right-handed alpha
Helix 4
AA4
A
67 86Right-handed alpha
Helix 5
AA5
A
96 112Right-handed alpha
Helix 6
AA6
A
120 142Right-handed alpha
Helix 7
AA7
A
143 151Right-handed 310
Helix 8
AA8
A
152 178Right-handed alpha
Helix 9
AA9
A
189 192Right-handed 310
Helix 10
AB1
A
193 219Right-handed alpha
Helix 11
AB2
A
228 252Right-handed alpha
Helix 12
AB3
A
253 258Right-handed 310
Helix 13
AB4
A
282 287Right-handed alpha
Helix 14
AB5
A
290 297Right-handed alpha
Helix 15
AB6
A
297 320Right-handed alpha
Helix 16
AB7
A
321 325Right-handed 310
Helix 17
AB8
A
331 350Right-handed alpha
Helix 18
AB9
A
359 368Right-handed alpha
Helix 19
AC1
A
464 480Right-handed alpha
Helix 20
AC2
A
480 485Right-handed alpha
Helix 21
AC3
A
488 503Right-handed alpha
Helix 22
AC4
A
507 517Right-handed alpha
Helix 23
AC5
A
519 521Right-handed 310
Helix 24
AC6
A
522 528Right-handed alpha
Helix 25
AC7
A
533 538Right-handed alpha
Helix 26
AC8
A
539 562Right-handed alpha
Helix 27
AC9
A
565 568Right-handed 310
Helix 28
AD1
A
569 589Right-handed alpha
Helix 29
AD2
A
591 598Right-handed alpha
Helix 30
AD3
B
8 19Right-handed alpha
Helix 31
AD4
B
21 33Right-handed alpha
Helix 32
AD5
B
36 62Right-handed alpha
Helix 33
AD6
B
67 86Right-handed alpha
Helix 34
AD7
B
96 112Right-handed alpha
Helix 35
AD8
B
120 142Right-handed alpha
Helix 36
AD9
B
143 151Right-handed 310
Helix 37
AE1
B
152 178Right-handed alpha
Helix 38
AE2
B
189 192Right-handed 310
Helix 39
AE3
B
193 219Right-handed alpha
Helix 40
AE4
B
228 252Right-handed alpha
Helix 41
AE5
B
253 258Right-handed 310
Helix 42
AE6
B
282 287Right-handed alpha
Helix 43
AE7
B
290 297Right-handed alpha
Helix 44
AE8
B
297 320Right-handed alpha
Helix 45
AE9
B
321 325Right-handed 310
Helix 46
AF1
B
331 350Right-handed alpha
Helix 47
AF2
B
359 368Right-handed alpha
Helix 48
AF3
B
464 480Right-handed alpha
Helix 49
AF4
B
480 485Right-handed alpha
Helix 50
AF5
B
488 503Right-handed alpha
Helix 51
AF6
B
507 517Right-handed alpha
Helix 52
AF7
B
519 521Right-handed 310
Helix 53
AF8
B
522 528Right-handed alpha
Helix 54
AF9
B
533 538Right-handed alpha
Helix 55
AG1
B
539 562Right-handed alpha
Helix 56
AG2
B
565 568Right-handed 310
Helix 57
AG3
B
569 589Right-handed alpha
Helix 58
AG4
B
591 598Right-handed alpha
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There are 4 sheets in PDB entry 8TEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
355 356anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
604 605anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
355 356anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 532first strand
Strand 2
B
604 605anti-parallel
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