Analysis of interatomic Contacts of Structural Units in PDB entry:
8TF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TF0 entry

There are 4 chains in PDB entry 8TF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 66ASN 337
A
 SER 66ASN 337
C
 PHE 76ASN 337
D
 PHE 76ASN 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8TF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
73 96Right-handed alpha
Helix 2
AA2
B
98 120Right-handed alpha
Helix 3
AA3
B
155 162Right-handed alpha
Helix 4
AA4
B
162 168Right-handed alpha
Helix 5
AA5
B
170 175Right-handed 310
Helix 6
AA6
B
187 202Right-handed alpha
Helix 7
AA7
B
253 259Right-handed 310
Helix 8
AA8
B
260 273Right-handed alpha
Helix 9
AA9
A
73 96Right-handed alpha
Helix 10
AB1
A
98 120Right-handed alpha
Helix 11
AB2
A
121 126Right-handed 310
Helix 12
AB3
A
155 162Right-handed alpha
Helix 13
AB4
A
162 168Right-handed alpha
Helix 14
AB5
A
170 179Right-handed 310
Helix 15
AB6
A
187 201Right-handed alpha
Helix 16
AB7
A
202 204Right-handed 310
Helix 17
AB8
A
253 259Right-handed 310
Helix 18
AB9
A
260 272Right-handed alpha
Helix 19
AC1
C
77 94Right-handed alpha
Helix 20
AC2
C
98 120Right-handed alpha
Helix 21
AC3
C
122 126Right-handed 310
Helix 22
AC4
C
155 162Right-handed alpha
Helix 23
AC5
C
162 168Right-handed alpha
Helix 24
AC6
C
187 205Right-handed alpha
Helix 25
AC7
C
253 259Right-handed 310
Helix 26
AC8
C
260 271Right-handed alpha
Helix 27
AC9
D
77 94Right-handed alpha
Helix 28
AD1
D
98 120Right-handed alpha
Helix 29
AD2
D
155 162Right-handed alpha
Helix 30
AD3
D
162 168Right-handed alpha
Helix 31
AD4
D
187 205Right-handed alpha
Helix 32
AD5
D
253 259Right-handed 310
Helix 33
AD6
D
260 272Right-handed alpha
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There are 4 sheets in PDB entry 8TF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 234first strand
Strand 2
B
221 225anti-parallel
Strand 3
B
206 214anti-parallel
Strand 4
B
244 251anti-parallel
Strand 5
B
144 149anti-parallel
Strand 6
B
134 139anti-parallel
Strand 7
B
279 283parallel
Strand 8
B
332 335anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
206 214anti-parallel
Strand 4
A
244 251anti-parallel
Strand 5
A
144 149anti-parallel
Strand 6
A
134 139anti-parallel
Strand 7
A
279 284parallel
Strand 8
A
331 335anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
230 234first strand
Strand 2
C
221 225anti-parallel
Strand 3
C
206 214anti-parallel
Strand 4
C
244 251anti-parallel
Strand 5
C
144 149anti-parallel
Strand 6
C
134 139anti-parallel
Strand 7
C
279 285parallel
Strand 8
C
330 335anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
230 234first strand
Strand 2
D
221 225anti-parallel
Strand 3
D
206 214anti-parallel
Strand 4
D
244 251anti-parallel
Strand 5
D
144 149anti-parallel
Strand 6
D
134 139anti-parallel
Strand 7
D
279 285parallel
Strand 8
D
330 335anti-parallel
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