Analysis of interatomic Contacts of Structural Units in PDB entry:
8TF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TF1 entry

There is 1 chain in PDB entry 8TF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8TF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 48Right-handed alpha
Helix 2
AA2
A
62 73Right-handed alpha
Helix 3
AA3
A
100 116Right-handed alpha
Helix 4
AA4
A
140 153Right-handed alpha
Helix 5
AA5
A
165 176Right-handed alpha
Helix 6
AA6
A
192 202Right-handed alpha
Helix 7
AA7
A
216 230Right-handed alpha
Helix 8
AA8
A
233 246Right-handed alpha
Helix 9
AA9
A
257 266Right-handed alpha
Helix 10
AB1
A
267 270Right-handed 310
Helix 11
AB2
A
273 282Right-handed alpha
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There are 3 sheets in PDB entry 8TF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
11 14anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
52 54parallel
Strand 3
A
80 85parallel
Strand 4
A
120 126parallel
Strand 5
A
156 162parallel
Strand 6
A
178 184parallel
Strand 7
A
205 209parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
95 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il