Analysis of interatomic Contacts of Structural Units in PDB entry:
8TF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TF2 entry

There are 4 chains in PDB entry 8TF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 28	HIS 637
B	ASP 28	HIS 637
C	ASP 28	HIS 637
D	ASP 28	HIS 637

There are140 helices in PDB entry 8TF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	46	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	57	67	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	91	102	Right-handed alpha
Helix 6	AA6	A	103	108	Right-handed 310
Helix 7	AA7	A	112	116	Right-handed 310
Helix 8	AA8	A	119	127	Right-handed alpha
Helix 9	AA9	A	129	138	Right-handed alpha
Helix 10	AB1	A	149	153	Right-handed 310
Helix 11	AB2	A	165	174	Right-handed alpha
Helix 12	AB3	A	175	185	Right-handed alpha
Helix 13	AB4	A	198	205	Right-handed alpha
Helix 14	AB5	A	208	221	Right-handed alpha
Helix 15	AB6	A	231	235	Right-handed 310
Helix 16	AB7	A	242	250	Right-handed alpha
Helix 17	AB8	A	252	261	Right-handed alpha
Helix 18	AB9	A	280	285	Right-handed alpha
Helix 19	AC1	A	291	298	Right-handed alpha
Helix 20	AC2	A	303	308	Right-handed alpha
Helix 21	AC3	A	310	324	Right-handed alpha
Helix 22	AC4	A	324	349	Right-handed alpha
Helix 23	AC5	A	372	377	Right-handed alpha
Helix 24	AC6	A	379	411	Right-handed alpha
Helix 25	AC7	A	411	418	Right-handed alpha
Helix 26	AC8	A	422	445	Right-handed alpha
Helix 27	AC9	A	450	465	Right-handed alpha
Helix 28	AD1	A	466	472	Right-handed 310
Helix 29	AD2	A	475	488	Right-handed alpha
Helix 30	AD3	A	488	513	Right-handed alpha
Helix 31	AD4	A	525	538	Right-handed alpha
Helix 32	AD5	A	552	566	Right-handed alpha
Helix 33	AD6	A	569	608	Right-handed alpha
Helix 34	AD7	A	609	613	Right-handed 310
Helix 35	AD8	A	621	624	Right-handed 310
Helix 36	AD9	B	29	46	Right-handed alpha
Helix 37	AE1	B	47	56	Right-handed alpha
Helix 38	AE2	B	57	67	Right-handed alpha
Helix 39	AE3	B	81	89	Right-handed alpha
Helix 40	AE4	B	91	102	Right-handed alpha
Helix 41	AE5	B	103	108	Right-handed 310
Helix 42	AE6	B	112	116	Right-handed 310
Helix 43	AE7	B	119	127	Right-handed alpha
Helix 44	AE8	B	129	138	Right-handed alpha
Helix 45	AE9	B	149	153	Right-handed 310
Helix 46	AF1	B	165	174	Right-handed alpha
Helix 47	AF2	B	175	185	Right-handed alpha
Helix 48	AF3	B	198	205	Right-handed alpha
Helix 49	AF4	B	208	221	Right-handed alpha
Helix 50	AF5	B	231	235	Right-handed 310
Helix 51	AF6	B	242	250	Right-handed alpha
Helix 52	AF7	B	252	261	Right-handed alpha
Helix 53	AF8	B	280	285	Right-handed alpha
Helix 54	AF9	B	291	298	Right-handed alpha
Helix 55	AG1	B	303	308	Right-handed alpha
Helix 56	AG2	B	310	324	Right-handed alpha
Helix 57	AG3	B	324	349	Right-handed alpha
Helix 58	AG4	B	372	377	Right-handed alpha
Helix 59	AG5	B	379	411	Right-handed alpha
Helix 60	AG6	B	411	418	Right-handed alpha
Helix 61	AG7	B	422	445	Right-handed alpha
Helix 62	AG8	B	450	465	Right-handed alpha
Helix 63	AG9	B	466	472	Right-handed 310
Helix 64	AH1	B	475	488	Right-handed alpha
Helix 65	AH2	B	488	513	Right-handed alpha
Helix 66	AH3	B	525	538	Right-handed alpha
Helix 67	AH4	B	552	566	Right-handed alpha
Helix 68	AH5	B	569	608	Right-handed alpha
Helix 69	AH6	B	609	613	Right-handed 310
Helix 70	AH7	B	621	624	Right-handed 310
Helix 71	AH8	C	29	46	Right-handed alpha
Helix 72	AH9	C	47	56	Right-handed alpha
Helix 73	AI1	C	57	67	Right-handed alpha
Helix 74	AI2	C	81	89	Right-handed alpha
Helix 75	AI3	C	91	102	Right-handed alpha
Helix 76	AI4	C	103	108	Right-handed 310
Helix 77	AI5	C	112	116	Right-handed 310
Helix 78	AI6	C	119	127	Right-handed alpha
Helix 79	AI7	C	129	138	Right-handed alpha
Helix 80	AI8	C	149	153	Right-handed 310
Helix 81	AI9	C	165	174	Right-handed alpha
Helix 82	AJ1	C	175	185	Right-handed alpha
Helix 83	AJ2	C	198	205	Right-handed alpha
Helix 84	AJ3	C	208	221	Right-handed alpha
Helix 85	AJ4	C	231	235	Right-handed 310
Helix 86	AJ5	C	242	250	Right-handed alpha
Helix 87	AJ6	C	252	261	Right-handed alpha
Helix 88	AJ7	C	280	285	Right-handed alpha
Helix 89	AJ8	C	291	298	Right-handed alpha
Helix 90	AJ9	C	303	308	Right-handed alpha
Helix 91	AK1	C	310	324	Right-handed alpha
Helix 92	AK2	C	324	349	Right-handed alpha
Helix 93	AK3	C	372	377	Right-handed alpha
Helix 94	AK4	C	379	411	Right-handed alpha
Helix 95	AK5	C	411	418	Right-handed alpha
Helix 96	AK6	C	422	445	Right-handed alpha
Helix 97	AK7	C	450	465	Right-handed alpha
Helix 98	AK8	C	466	472	Right-handed 310
Helix 99	AK9	C	475	488	Right-handed alpha
Helix 100	AL1	C	488	513	Right-handed alpha
Helix 101	AL2	C	525	538	Right-handed alpha
Helix 102	AL3	C	552	566	Right-handed alpha
Helix 103	AL4	C	569	608	Right-handed alpha
Helix 104	AL5	C	609	613	Right-handed 310
Helix 105	AL6	C	621	624	Right-handed 310
Helix 106	AL7	D	29	46	Right-handed alpha
Helix 107	AL8	D	47	56	Right-handed alpha
Helix 108	AL9	D	57	67	Right-handed alpha
Helix 109	AM1	D	81	89	Right-handed alpha
Helix 110	AM2	D	91	102	Right-handed alpha
Helix 111	AM3	D	103	108	Right-handed 310
Helix 112	AM4	D	112	116	Right-handed 310
Helix 113	AM5	D	119	127	Right-handed alpha
Helix 114	AM6	D	129	138	Right-handed alpha
Helix 115	AM7	D	149	153	Right-handed 310
Helix 116	AM8	D	165	174	Right-handed alpha
Helix 117	AM9	D	175	185	Right-handed alpha
Helix 118	AN1	D	198	205	Right-handed alpha
Helix 119	AN2	D	208	221	Right-handed alpha
Helix 120	AN3	D	231	235	Right-handed 310
Helix 121	AN4	D	242	250	Right-handed alpha
Helix 122	AN5	D	252	261	Right-handed alpha
Helix 123	AN6	D	280	285	Right-handed alpha
Helix 124	AN7	D	291	298	Right-handed alpha
Helix 125	AN8	D	303	308	Right-handed alpha
Helix 126	AN9	D	310	324	Right-handed alpha
Helix 127	AO1	D	324	349	Right-handed alpha
Helix 128	AO2	D	372	377	Right-handed alpha
Helix 129	AO3	D	379	411	Right-handed alpha
Helix 130	AO4	D	411	418	Right-handed alpha
Helix 131	AO5	D	422	445	Right-handed alpha
Helix 132	AO6	D	450	465	Right-handed alpha
Helix 133	AO7	D	466	472	Right-handed 310
Helix 134	AO8	D	475	488	Right-handed alpha
Helix 135	AO9	D	488	513	Right-handed alpha
Helix 136	AP1	D	525	538	Right-handed alpha
Helix 137	AP2	D	552	566	Right-handed alpha
Helix 138	AP3	D	569	608	Right-handed alpha
Helix 139	AP4	D	609	613	Right-handed 310
Helix 140	AP5	D	621	624	Right-handed 310

There are 8 sheets in PDB entry 8TF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	273	279	anti-parallel
Strand 3	A	629	636	anti-parallel
Strand 4	A	618	619	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	368	370	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	629	636	anti-parallel
Strand 4	B	618	619	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	368	370	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	273	279	anti-parallel
Strand 3	C	629	636	anti-parallel
Strand 4	C	618	619	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	368	370	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	270	first strand
Strand 2	D	273	279	anti-parallel
Strand 3	D	629	636	anti-parallel
Strand 4	D	618	619	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	368	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TF2