Analysis of interatomic Contacts of Structural Units in PDB entry:
8TF7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TF7 entry

There are 2 chains in PDB entry 8TF7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 528
B	MET 1	VAL 527

There are 38 helices in PDB entry 8TF7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	13	Right-handed alpha
Helix 2	AA2	A	21	26	Right-handed alpha
Helix 3	AA3	A	27	30	Right-handed 310
Helix 4	AA4	A	57	75	Right-handed alpha
Helix 5	AA5	A	88	101	Right-handed alpha
Helix 6	AA6	A	114	126	Right-handed alpha
Helix 7	AA7	A	133	141	Right-handed alpha
Helix 8	AA8	A	142	146	Right-handed 310
Helix 9	AA9	A	157	159	Right-handed 310
Helix 10	AB1	A	162	167	Right-handed 310
Helix 11	AB2	A	201	203	Right-handed 310
Helix 12	AB3	A	204	213	Right-handed alpha
Helix 13	AB4	A	230	244	Right-handed alpha
Helix 14	AB5	A	254	266	Right-handed alpha
Helix 15	AB6	A	273	282	Right-handed alpha
Helix 16	AB7	A	308	313	Right-handed alpha
Helix 17	AB8	A	404	410	Right-handed alpha
Helix 18	AB9	A	450	461	Right-handed alpha
Helix 19	AC1	A	504	517	Right-handed alpha
Helix 20	AC2	B	4	14	Right-handed alpha
Helix 21	AC3	B	21	26	Right-handed alpha
Helix 22	AC4	B	27	30	Right-handed 310
Helix 23	AC5	B	57	74	Right-handed alpha
Helix 24	AC6	B	88	102	Right-handed alpha
Helix 25	AC7	B	114	126	Right-handed alpha
Helix 26	AC8	B	133	141	Right-handed alpha
Helix 27	AC9	B	142	146	Right-handed 310
Helix 28	AD1	B	157	159	Right-handed 310
Helix 29	AD2	B	162	167	Right-handed 310
Helix 30	AD3	B	201	213	Right-handed alpha
Helix 31	AD4	B	230	244	Right-handed alpha
Helix 32	AD5	B	254	266	Right-handed alpha
Helix 33	AD6	B	273	282	Right-handed alpha
Helix 34	AD7	B	308	313	Right-handed alpha
Helix 35	AD8	B	404	410	Right-handed alpha
Helix 36	AD9	B	438	440	Right-handed 310
Helix 37	AE1	B	449	461	Right-handed alpha
Helix 38	AE2	B	504	516	Right-handed alpha

There are 14 sheets in PDB entry 8TF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	36	39	anti-parallel
Strand 3	A	247	249	parallel
Strand 4	A	222	224	parallel
Strand 5	A	269	272	parallel
Strand 6	A	295	298	parallel
Strand 7	A	333	336	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	129	132	parallel
Strand 3	A	81	86	parallel
Strand 4	A	105	110	parallel
Strand 5	A	180	185	parallel
Strand 6	A	195	199	anti-parallel
Strand 7	A	400	401	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	320	first strand
Strand 2	A	326	330	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	416	425	anti-parallel
Strand 5	A	388	394	anti-parallel
Strand 6	A	370	375	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	416	425	anti-parallel
Strand 5	A	412	413	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	447	449	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	472	first strand
Strand 2	A	488	495	anti-parallel
Strand 3	A	523	526	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	247	249	parallel
Strand 4	B	222	224	parallel
Strand 5	B	269	272	parallel
Strand 6	B	295	298	parallel
Strand 7	B	333	336	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	130	132	parallel
Strand 3	B	81	86	parallel
Strand 4	B	105	110	parallel
Strand 5	B	180	185	parallel
Strand 6	B	195	199	anti-parallel
Strand 7	B	400	401	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	326	330	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	416	425	anti-parallel
Strand 5	B	388	394	anti-parallel
Strand 6	B	370	375	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	416	425	anti-parallel
Strand 5	B	412	413	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	447	448	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	472	first strand
Strand 2	B	488	495	anti-parallel
Strand 3	B	523	527	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TF7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TF7