Analysis of interatomic Contacts of Structural Units in PDB entry:
8TFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TFN entry

There are 4 chains in PDB entry 8TFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3THR 200
B
 GLY 3ASP 242
H
 GLN 1LYS 216
L
 ASP 1GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8TFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 84Right-handed 310
Helix 2
AA2
A
97 101Right-handed 310
Helix 3
AA3
A
167 170Right-handed 310
Helix 4
AA4
B
82 86Right-handed 310
Helix 5
AA5
B
114 118Right-handed 310
Helix 6
AA6
B
129 137Right-handed alpha
Helix 7
AA7
B
196 200Right-handed alpha
Helix 8
AA8
H
28 31Right-handed 310
Helix 9
AA9
H
62 65Right-handed 310
Helix 10
AB1
L
121 126Right-handed alpha
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There are 21 sheets in PDB entry 8TFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
108 113parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
45 50anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
108 113parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
103 104anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
54 58anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
171 179anti-parallel
Strand 4
A
157 158anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
171 179anti-parallel
Strand 4
A
162 166anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
76 78anti-parallel
Strand 4
B
64 66anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
107 112parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
31 38anti-parallel
Strand 5
B
42 51anti-parallel
Strand 6
B
54 57anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
107 112parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
102 103anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 126first strand
Strand 2
B
138 148anti-parallel
Strand 3
B
186 195anti-parallel
Strand 4
B
168 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 126first strand
Strand 2
B
138 148anti-parallel
Strand 3
B
186 195anti-parallel
Strand 4
B
175 176anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 159first strand
Strand 2
B
205 212anti-parallel
Strand 3
B
231 238anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 5first strand
Strand 2
H
17 24anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
70 73anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
92 99anti-parallel
Strand 5
H
108 109anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
92 99anti-parallel
Strand 5
H
113 115anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 146first strand
Strand 2
H
186 188anti-parallel
Strand 3
H
169 171anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 160first strand
Strand 2
H
202 206anti-parallel
Strand 3
H
211 213anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
175 176first strand
Strand 2
H
182 183anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
20 24anti-parallel
Strand 3
L
70 74anti-parallel
Strand 4
L
63 67anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 13first strand
Strand 2
L
104 106parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
45 49anti-parallel
Strand 3
L
33 38anti-parallel
Strand 4
L
85 90anti-parallel
Strand 5
L
97 98anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 118first strand
Strand 2
L
133 139anti-parallel
Strand 3
L
173 178anti-parallel
Strand 4
L
160 162anti-parallel
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