Analysis of interatomic Contacts of Structural Units in PDB entry:
8TFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TFO entry

There are 2 chains in PDB entry 8TFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 406
B	MET 1	PRO 405

There are 28 helices in PDB entry 8TFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed 310
Helix 2	AA2	A	65	75	Right-handed alpha
Helix 3	AA3	A	87	99	Right-handed alpha
Helix 4	AA4	A	120	139	Right-handed alpha
Helix 5	AA5	A	155	159	Right-handed 310
Helix 6	AA6	A	161	178	Right-handed alpha
Helix 7	AA7	A	198	217	Right-handed alpha
Helix 8	AA8	A	222	231	Right-handed alpha
Helix 9	AA9	A	262	277	Right-handed alpha
Helix 10	AB1	A	277	302	Right-handed alpha
Helix 11	AB2	A	307	328	Right-handed alpha
Helix 12	AB3	A	332	345	Right-handed alpha
Helix 13	AB4	A	365	371	Right-handed alpha
Helix 14	AB5	A	371	385	Right-handed alpha
Helix 15	AB6	B	21	26	Right-handed 310
Helix 16	AB7	B	65	74	Right-handed alpha
Helix 17	AB8	B	87	96	Right-handed alpha
Helix 18	AB9	B	118	139	Right-handed alpha
Helix 19	AC1	B	155	159	Right-handed 310
Helix 20	AC2	B	161	178	Right-handed alpha
Helix 21	AC3	B	198	217	Right-handed alpha
Helix 22	AC4	B	222	231	Right-handed alpha
Helix 23	AC5	B	262	277	Right-handed alpha
Helix 24	AC6	B	277	302	Right-handed alpha
Helix 25	AC7	B	307	328	Right-handed alpha
Helix 26	AC8	B	332	345	Right-handed alpha
Helix 27	AC9	B	365	370	Right-handed 310
Helix 28	AD1	B	371	385	Right-handed alpha

There are 8 sheets in PDB entry 8TFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	64	first strand
Strand 2	A	49	54	anti-parallel
Strand 3	A	146	152	parallel
Strand 4	A	29	44	anti-parallel
Strand 5	A	233	237	anti-parallel
Strand 6	A	240	243	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	64	first strand
Strand 2	A	49	54	anti-parallel
Strand 3	A	146	152	parallel
Strand 4	A	29	44	anti-parallel
Strand 5	A	6	18	anti-parallel
Strand 6	A	400	402	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	191	first strand
Strand 2	A	194	196	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	359	363	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	388	391	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	64	first strand
Strand 2	B	49	54	anti-parallel
Strand 3	B	146	152	parallel
Strand 4	B	29	44	anti-parallel
Strand 5	B	233	237	anti-parallel
Strand 6	B	240	243	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	64	first strand
Strand 2	B	49	54	anti-parallel
Strand 3	B	146	152	parallel
Strand 4	B	29	44	anti-parallel
Strand 5	B	6	18	anti-parallel
Strand 6	B	400	401	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	194	196	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	359	363	anti-parallel
Strand 3	B	252	256	anti-parallel
Strand 4	B	388	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TFO