Analysis of interatomic Contacts of Structural Units in PDB entry:
8TFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TFT entry

There are 6 chains in PDB entry 8TFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	GLU 1	SER 224
M	SER 1	THR 211
F	SER 1	LYS 109
H	GLU 1	SER 224
L	SER 1	CYS 213
G	SER 1	LYS 109

There are 24 helices in PDB entry 8TFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	28	32	Right-handed 310
Helix 2	AA2	I	62	65	Right-handed 310
Helix 3	AA3	I	74	76	Right-handed 310
Helix 4	AA4	I	87	91	Right-handed 310
Helix 5	AA5	I	196	198	Right-handed 310
Helix 6	AA6	I	210	213	Right-handed 310
Helix 7	AA7	M	26	30	Right-handed 310
Helix 8	AA8	M	78	82	Right-handed 310
Helix 9	AA9	M	123	129	Right-handed alpha
Helix 10	AB1	M	183	190	Right-handed alpha
Helix 11	AB2	F	66	70	Right-handed 310
Helix 12	AB3	F	80	84	Right-handed 310
Helix 13	AB4	H	28	32	Right-handed 310
Helix 14	AB5	H	62	65	Right-handed 310
Helix 15	AB6	H	74	76	Right-handed 310
Helix 16	AB7	H	87	91	Right-handed 310
Helix 17	AB8	H	194	198	Right-handed 310
Helix 18	AB9	H	210	213	Right-handed 310
Helix 19	AC1	L	26	30	Right-handed 310
Helix 20	AC2	L	78	82	Right-handed 310
Helix 21	AC3	L	123	129	Right-handed alpha
Helix 22	AC4	L	183	190	Right-handed alpha
Helix 23	AC5	G	66	70	Right-handed 310
Helix 24	AC6	G	80	84	Right-handed 310

There are 28 sheets in PDB entry 8TFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	116	120	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	116	120	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	111	112	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	133	first strand
Strand 2	I	144	154	anti-parallel
Strand 3	I	185	194	anti-parallel
Strand 4	I	172	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	133	first strand
Strand 2	I	144	154	anti-parallel
Strand 3	I	185	194	anti-parallel
Strand 4	I	178	179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	160	163	first strand
Strand 2	I	203	209	anti-parallel
Strand 3	I	214	220	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	12	first strand
Strand 2	M	103	107	parallel
Strand 3	M	83	91	anti-parallel
Strand 4	M	33	37	anti-parallel
Strand 5	M	44	47	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	12	first strand
Strand 2	M	103	107	parallel
Strand 3	M	83	91	anti-parallel
Strand 4	M	96	99	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	23	first strand
Strand 2	M	69	74	anti-parallel
Strand 3	M	61	66	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	116	120	first strand
Strand 2	M	132	141	anti-parallel
Strand 3	M	174	182	anti-parallel
Strand 4	M	161	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	116	120	first strand
Strand 2	M	132	141	anti-parallel
Strand 3	M	174	182	anti-parallel
Strand 4	M	167	168	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	155	157	first strand
Strand 2	M	147	152	anti-parallel
Strand 3	M	193	199	anti-parallel
Strand 4	M	202	208	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	100	109	parallel
Strand 3	F	85	91	anti-parallel
Strand 4	F	30	34	anti-parallel
Strand 5	F	44	49	anti-parallel
Strand 6	F	54	56	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	15	first strand
Strand 2	F	74	76	anti-parallel
Strand 3	F	61	63	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	111	112	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	145	154	anti-parallel
Strand 3	H	185	193	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	133	first strand
Strand 2	H	145	154	anti-parallel
Strand 3	H	185	193	anti-parallel
Strand 4	H	178	179	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	163	first strand
Strand 2	H	203	209	anti-parallel
Strand 3	H	214	220	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	103	107	parallel
Strand 3	L	83	91	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	103	107	parallel
Strand 3	L	83	91	anti-parallel
Strand 4	L	96	99	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	161	163	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	167	168	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	202	208	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	100	109	parallel
Strand 3	G	85	91	anti-parallel
Strand 4	G	30	34	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	54	56	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	74	76	anti-parallel
Strand 3	G	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TFT