Analysis of interatomic Contacts of Structural Units in PDB entry:
8TGA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TGA entry

There are 6 chains in PDB entry 8TGA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 1	PHE 425
F	ASN 1	CYS 213
E	VAL 2	VAL 222
A	GLY 1	PHE 425
L	ASN 1	CYS 213
H	VAL 2	VAL 222

There are 40 helices in PDB entry 8TGA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	36	Right-handed alpha
Helix 2	AA2	B	63	77	Right-handed alpha
Helix 3	AA3	B	86	101	Right-handed alpha
Helix 4	AA4	B	111	116	Right-handed 310
Helix 5	AA5	B	130	145	Right-handed alpha
Helix 6	AA6	B	162	180	Right-handed alpha
Helix 7	AA7	B	191	203	Right-handed alpha
Helix 8	AA8	B	204	206	Right-handed 310
Helix 9	AA9	B	215	230	Right-handed alpha
Helix 10	AB1	B	266	274	Right-handed alpha
Helix 11	AB2	B	287	306	Right-handed alpha
Helix 12	AB3	B	312	314	Right-handed 310
Helix 13	AB4	B	315	337	Right-handed alpha
Helix 14	AB5	B	344	353	Right-handed alpha
Helix 15	AB6	F	120	127	Right-handed alpha
Helix 16	AB7	F	182	187	Right-handed alpha
Helix 17	AB8	E	28	30	Right-handed 310
Helix 18	AB9	E	87	91	Right-handed 310
Helix 19	AC1	E	167	169	Right-handed 310
Helix 20	AC2	E	196	201	Right-handed 310
Helix 21	AC3	A	19	37	Right-handed alpha
Helix 22	AC4	A	63	76	Right-handed alpha
Helix 23	AC5	A	86	101	Right-handed alpha
Helix 24	AC6	A	111	116	Right-handed 310
Helix 25	AC7	A	129	145	Right-handed alpha
Helix 26	AC8	A	162	180	Right-handed alpha
Helix 27	AC9	A	193	203	Right-handed alpha
Helix 28	AD1	A	204	206	Right-handed 310
Helix 29	AD2	A	215	230	Right-handed alpha
Helix 30	AD3	A	266	274	Right-handed alpha
Helix 31	AD4	A	287	306	Right-handed alpha
Helix 32	AD5	A	312	314	Right-handed 310
Helix 33	AD6	A	315	337	Right-handed alpha
Helix 34	AD7	A	345	353	Right-handed alpha
Helix 35	AD8	L	120	127	Right-handed alpha
Helix 36	AD9	L	182	186	Right-handed alpha
Helix 37	AE1	H	28	30	Right-handed 310
Helix 38	AE2	H	87	91	Right-handed 310
Helix 39	AE3	H	165	169	Right-handed 310
Helix 40	AE4	H	196	200	Right-handed 310

There are 29 sheets in PDB entry 8TGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	2	8	parallel
Strand 3	B	80	82	parallel
Strand 4	B	104	106	parallel
Strand 5	B	123	125	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	149	156	parallel
Strand 3	B	186	189	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	149	156	parallel
Strand 3	B	209	213	parallel
Strand 4	B	237	241	parallel
Strand 5	B	277	282	parallel
Strand 6	B	376	381	anti-parallel
Strand 7	B	388	395	anti-parallel
Strand 8	B	400	403	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	359	first strand
Strand 2	B	362	366	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	29	anti-parallel
Strand 3	F	62	76	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	104	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	46	first strand
Strand 2	F	33	38	anti-parallel
Strand 3	F	85	90	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	117	first strand
Strand 2	F	128	138	anti-parallel
Strand 3	F	172	181	anti-parallel
Strand 4	F	158	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	144	149	anti-parallel
Strand 3	F	190	196	anti-parallel
Strand 4	F	204	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	57	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	113	114	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	187	195	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	147	156	anti-parallel
Strand 3	E	187	195	anti-parallel
Strand 4	E	180	181	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	216	221	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	51	first strand
Strand 2	A	2	8	parallel
Strand 3	A	80	82	parallel
Strand 4	A	104	106	parallel
Strand 5	A	123	125	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	149	156	parallel
Strand 3	A	186	189	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	149	156	parallel
Strand 3	A	209	213	parallel
Strand 4	A	237	241	parallel
Strand 5	A	277	282	parallel
Strand 6	A	376	381	anti-parallel
Strand 7	A	388	395	anti-parallel
Strand 8	A	400	403	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	363	366	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	62	75	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	105	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	48	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	136	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	143	149	first strand
Strand 2	L	190	197	anti-parallel
Strand 3	L	204	209	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	92	101	anti-parallel
Strand 4	H	32	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	150	156	anti-parallel
Strand 3	H	187	192	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	206	211	first strand
Strand 2	H	216	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TGA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TGA