Analysis of interatomic Contacts of Structural Units in PDB entry:
8TGV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TGV entry

There are 11 chains in PDB entry 8TGV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 415	ILE 646
E	GLU 10	CYS 221
F	SER 1	CYS 213
D	THR 416	ILE 646
B	ALA 9	ASP 222
C	SER 1	CYS 213
G	ASN 417	ILE 646
I	GLU 10	ASP 222
J	SER 1	CYS 213
K	VAL 11	CYS 221
L	THR 5	CYS 213

There are 42 helices in PDB entry 8TGV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	438	442	Right-handed 310
Helix 2	AA2	A	451	457	Right-handed alpha
Helix 3	AA3	A	593	598	Right-handed alpha
Helix 4	AA4	A	613	618	Right-handed alpha
Helix 5	AA5	A	619	622	Right-handed 310
Helix 6	AA6	E	87	91	Right-handed 310
Helix 7	AA7	E	161	163	Right-handed 310
Helix 8	AA8	E	190	194	Right-handed 310
Helix 9	AA9	F	26	30	Right-handed 310
Helix 10	AB1	F	78	82	Right-handed 310
Helix 11	AB2	F	120	127	Right-handed alpha
Helix 12	AB3	F	182	187	Right-handed alpha
Helix 13	AB4	D	437	441	Right-handed 310
Helix 14	AB5	D	451	457	Right-handed alpha
Helix 15	AB6	D	543	547	Right-handed 310
Helix 16	AB7	D	613	618	Right-handed alpha
Helix 17	AB8	D	619	622	Right-handed 310
Helix 18	AB9	B	87	91	Right-handed 310
Helix 19	AC1	B	159	163	Right-handed 310
Helix 20	AC2	B	190	196	Right-handed 310
Helix 21	AC3	C	26	30	Right-handed 310
Helix 22	AC4	C	120	125	Right-handed alpha
Helix 23	AC5	G	438	442	Right-handed 310
Helix 24	AC6	G	451	457	Right-handed alpha
Helix 25	AC7	G	500	502	Right-handed 310
Helix 26	AC8	G	543	547	Right-handed 310
Helix 27	AC9	G	594	598	Right-handed alpha
Helix 28	AD1	G	613	618	Right-handed alpha
Helix 29	AD2	G	619	622	Right-handed 310
Helix 30	AD3	I	87	91	Right-handed 310
Helix 31	AD4	I	161	163	Right-handed 310
Helix 32	AD5	I	192	194	Right-handed 310
Helix 33	AD6	I	206	209	Right-handed 310
Helix 34	AD7	J	26	30	Right-handed 310
Helix 35	AD8	J	78	82	Right-handed 310
Helix 36	AD9	J	123	126	Right-handed 310
Helix 37	AE1	J	182	186	Right-handed alpha
Helix 38	AE2	K	87	91	Right-handed 310
Helix 39	AE3	K	161	163	Right-handed 310
Helix 40	AE4	K	192	194	Right-handed 310
Helix 41	AE5	K	206	209	Right-handed 310
Helix 42	AE6	L	122	126	Right-handed 310

There are 51 sheets in PDB entry 8TGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	536	538	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	507	509	anti-parallel
Strand 3	A	551	556	anti-parallel
Strand 4	A	560	565	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	607	609	anti-parallel
Strand 3	A	636	644	anti-parallel
Strand 4	A	627	633	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	23	first strand
Strand 2	E	78	84	anti-parallel
Strand 3	E	70	73	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	60	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	60	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	92	95	anti-parallel
Strand 5	E	113	115	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	128	first strand
Strand 2	E	145	150	anti-parallel
Strand 3	E	181	185	anti-parallel
Strand 4	E	174	175	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	188	189	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	200	205	anti-parallel
Strand 3	E	210	215	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	101	105	parallel
Strand 3	F	84	91	anti-parallel
Strand 4	F	33	37	anti-parallel
Strand 5	F	44	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	101	105	parallel
Strand 3	F	84	91	anti-parallel
Strand 4	F	94	97	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	69	74	anti-parallel
Strand 3	F	62	66	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	117	first strand
Strand 2	F	128	138	anti-parallel
Strand 3	F	172	181	anti-parallel
Strand 4	F	158	162	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	149	first strand
Strand 2	F	190	196	anti-parallel
Strand 3	F	204	205	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	149	first strand
Strand 2	F	190	196	anti-parallel
Strand 3	F	208	209	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	513	516	first strand
Strand 2	D	506	509	anti-parallel
Strand 3	D	551	555	anti-parallel
Strand 4	D	561	565	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	602	604	first strand
Strand 2	D	607	609	anti-parallel
Strand 3	D	638	644	anti-parallel
Strand 4	D	625	631	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	23	first strand
Strand 2	B	78	84	anti-parallel
Strand 3	B	68	73	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	33	39	anti-parallel
Strand 4	B	92	99	anti-parallel
Strand 5	B	113	115	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	181	189	anti-parallel
Strand 4	B	168	170	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	181	189	anti-parallel
Strand 4	B	174	175	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	210	215	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	101	105	parallel
Strand 3	C	83	91	anti-parallel
Strand 4	C	33	37	anti-parallel
Strand 5	C	44	48	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	101	105	parallel
Strand 3	C	83	91	anti-parallel
Strand 4	C	94	97	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	23	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	62	66	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	117	first strand
Strand 2	C	130	138	anti-parallel
Strand 3	C	172	179	anti-parallel
Strand 4	C	158	162	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	149	first strand
Strand 2	C	190	196	anti-parallel
Strand 3	C	204	209	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	496	498	first strand
Strand 2	G	536	538	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	507	509	first strand
Strand 2	G	513	515	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	551	555	first strand
Strand 2	G	561	565	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	608	609	first strand
Strand 2	G	642	643	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	23	first strand
Strand 2	I	78	84	anti-parallel
Strand 3	I	68	73	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	33	39	anti-parallel
Strand 4	I	93	99	anti-parallel
Strand 5	I	113	114	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	128	first strand
Strand 2	I	140	150	anti-parallel
Strand 3	I	181	190	anti-parallel
Strand 4	I	169	170	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	128	first strand
Strand 2	I	140	150	anti-parallel
Strand 3	I	181	190	anti-parallel
Strand 4	I	174	175	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	159	first strand
Strand 2	I	199	205	anti-parallel
Strand 3	I	210	216	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	101	104	parallel
Strand 3	J	84	91	anti-parallel
Strand 4	J	32	37	anti-parallel
Strand 5	J	44	48	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	101	104	parallel
Strand 3	J	84	91	anti-parallel
Strand 4	J	94	97	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	69	74	anti-parallel
Strand 3	J	62	66	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	117	first strand
Strand 2	J	128	138	anti-parallel
Strand 3	J	172	181	anti-parallel
Strand 4	J	158	162	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	144	149	first strand
Strand 2	J	191	196	anti-parallel
Strand 3	J	204	207	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	21	first strand
Strand 2	K	80	84	anti-parallel
Strand 3	K	68	71	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	60	first strand
Strand 2	K	46	51	anti-parallel
Strand 3	K	33	39	anti-parallel
Strand 4	K	93	99	anti-parallel
Strand 5	K	113	114	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	129	first strand
Strand 2	K	140	150	anti-parallel
Strand 3	K	181	190	anti-parallel
Strand 4	K	168	170	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	125	129	first strand
Strand 2	K	140	150	anti-parallel
Strand 3	K	181	190	anti-parallel
Strand 4	K	174	175	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	156	159	first strand
Strand 2	K	200	205	anti-parallel
Strand 3	K	210	215	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	101	105	parallel
Strand 3	L	83	89	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	101	105	parallel
Strand 3	L	83	89	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	144	147	first strand
Strand 2	L	190	196	anti-parallel
Strand 3	L	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TGV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TGV