Analysis of interatomic Contacts of Structural Units in PDB entry:
8TH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TH2 entry

There are 6 chains in PDB entry 8TH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	TYR 193
B	ASN 23	TYR 193
C	PHE 21	TYR 193
D	ALA 24	TYR 193
E	ASN 23	TYR 193
F	THR 25	TYR 193

There are 12 helices in PDB entry 8TH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	133	Right-handed 310
Helix 2	AA2	A	159	162	Right-handed 310
Helix 3	AA3	B	31	35	Right-handed 310
Helix 4	AA4	B	159	162	Right-handed 310
Helix 5	AA5	C	129	133	Right-handed 310
Helix 6	AA6	C	159	162	Right-handed 310
Helix 7	AA7	D	31	36	Right-handed 310
Helix 8	AA8	D	159	162	Right-handed 310
Helix 9	AA9	E	31	36	Right-handed 310
Helix 10	AB1	E	159	162	Right-handed 310
Helix 11	AB2	F	31	36	Right-handed 310
Helix 12	AB3	F	159	162	Right-handed 310

There are 11 sheets in PDB entry 8TH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	D	41	49	anti-parallel
Strand 3	D	81	89	anti-parallel
Strand 4	D	184	192	first strand
Strand 5	D	165	171	anti-parallel
Strand 6	D	149	154	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	64	first strand
Strand 2	D	81	89	anti-parallel
Strand 3	D	41	49	anti-parallel
Strand 4	D	98	108	first strand
Strand 5	D	118	127	anti-parallel
Strand 6	D	136	144	anti-parallel
Strand 7	D	156	157	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	81	89	anti-parallel
Strand 3	A	41	49	anti-parallel
Strand 4	D	27	30	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	81	89	anti-parallel
Strand 3	A	98	108	anti-parallel
Strand 4	A	118	127	anti-parallel
Strand 5	A	136	144	anti-parallel
Strand 6	A	149	158	anti-parallel
Strand 7	A	165	171	anti-parallel
Strand 8	A	184	192	anti-parallel
Strand 9	A	41	49	anti-parallel
Strand 10	D	27	30	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	F	41	50	anti-parallel
Strand 3	F	81	89	anti-parallel
Strand 4	F	60	64	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	F	41	50	anti-parallel
Strand 3	F	183	192	anti-parallel
Strand 4	F	165	171	anti-parallel
Strand 5	F	149	158	anti-parallel
Strand 6	F	136	144	anti-parallel
Strand 7	F	118	127	anti-parallel
Strand 8	F	98	108	anti-parallel
Strand 9	F	81	89	anti-parallel
Strand 10	F	60	64	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	81	89	anti-parallel
Strand 3	B	41	49	anti-parallel
Strand 4	F	27	30	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	81	89	anti-parallel
Strand 3	B	98	108	anti-parallel
Strand 4	B	118	127	anti-parallel
Strand 5	B	136	144	anti-parallel
Strand 6	B	149	158	anti-parallel
Strand 7	B	165	171	anti-parallel
Strand 8	B	184	192	anti-parallel
Strand 9	B	41	49	anti-parallel
Strand 10	F	27	30	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	64	first strand
Strand 2	C	81	89	anti-parallel
Strand 3	C	41	51	anti-parallel
Strand 4	E	27	30	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	64	first strand
Strand 2	C	81	89	anti-parallel
Strand 3	C	98	108	anti-parallel
Strand 4	C	118	127	anti-parallel
Strand 5	C	136	144	anti-parallel
Strand 6	C	150	157	anti-parallel
Strand 7	C	165	175	anti-parallel
Strand 8	C	182	192	anti-parallel
Strand 9	C	41	51	anti-parallel
Strand 10	E	27	30	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	64	first strand
Strand 2	E	81	89	anti-parallel
Strand 3	E	98	108	anti-parallel
Strand 4	E	118	127	anti-parallel
Strand 5	E	136	144	anti-parallel
Strand 6	E	149	158	anti-parallel
Strand 7	E	165	171	anti-parallel
Strand 8	E	182	192	anti-parallel
Strand 9	E	41	51	anti-parallel
Strand 10	E	81	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TH2