Analysis of interatomic Contacts of Structural Units in PDB entry:
8TH3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TH3 entry

There are 4 chains in PDB entry 8TH3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 18LEU 1316
B
 SER 17THR 115
C
 GLU 4VAL 125
D
 ASP 2GLU 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8TH3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 56Right-handed alpha
Helix 2
AA2
A
61 81Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
97 132Right-handed alpha
Helix 5
AA5
A
138 159Right-handed alpha
Helix 6
AA6
A
161 166Right-handed alpha
Helix 7
AA7
A
190 202Right-handed alpha
Helix 8
AA8
A
204 244Right-handed alpha
Helix 9
AA9
A
249 267Right-handed alpha
Helix 10
AB1
A
284 306Right-handed alpha
Helix 11
AB2
A
309 316Right-handed alpha
Helix 12
AB3
A
317 326Right-handed alpha
Helix 13
AB4
A
327 1235Right-handed alpha
Helix 14
AB5
A
1236 1253Right-handed alpha
Helix 15
AB6
A
1253 1269Right-handed alpha
Helix 16
AB7
A
1273 1302Right-handed alpha
Helix 17
AB8
A
1306 1308Right-handed 310
Helix 18
AB9
A
1309 1316Right-handed alpha
Helix 19
AC1
B
25 32Right-handed alpha
Helix 20
AC2
C
90 94Right-handed 310
Helix 21
AC3
C
107 112Right-handed alpha
Helix 22
AC4
D
80 84Right-handed 310
Helix 23
AC5
D
94 98Right-handed 310
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There are 8 sheets in PDB entry 8TH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
178 184anti-parallel
Strand 3
B
105 107parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
33 39anti-parallel
Strand 6
B
46 51anti-parallel
Strand 7
B
58 59anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
178 184anti-parallel
Strand 3
B
105 107parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
112 113anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
68 69anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
71 76anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
121 124parallel
Strand 3
C
95 103anti-parallel
Strand 4
C
35 42anti-parallel
Strand 5
C
48 54anti-parallel
Strand 6
C
62 63anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
20 26anti-parallel
Strand 3
D
71 76anti-parallel
Strand 4
D
63 68anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
105 106parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
46 50anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
86 91anti-parallel
Strand 5
D
99 100anti-parallel
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