Analysis of interatomic Contacts of Structural Units in PDB entry:
8TH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TH8 entry

There are 18 chains in PDB entry 8TH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 290
B	MET 1	LYS 276
C	ASP 31	ASN 575
D	MET 1	LEU 292
E	MET 1	LYS 291
F	MET 1	GLU 461
G	MET 1	LYS 345
H	MET 1	LYS 852
I	MET 1	LYS 185
J	MET 1	LYS 372
K	MET 1	LYS 434
L	MET 1	LYS 862
P	SER 104	LYS 408
Q	MET 1	ARG 202
R	MET 1	ARG 202
S	MET 1	ASN 187
i	MET 1	LYS 185
s	MET 1	ASN 187

There are204 helices in PDB entry 8TH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	29	Right-handed alpha
Helix 2	AA2	A	32	50	Right-handed alpha
Helix 3	AA3	A	52	82	Right-handed alpha
Helix 4	AA4	A	86	182	Right-handed alpha
Helix 5	AA5	A	186	230	Right-handed alpha
Helix 6	AA6	A	236	290	Right-handed alpha
Helix 7	AA7	B	31	45	Right-handed alpha
Helix 8	AA8	B	47	52	Right-handed alpha
Helix 9	AA9	B	61	110	Right-handed alpha
Helix 10	AB1	B	111	179	Right-handed alpha
Helix 11	AB2	B	181	227	Right-handed alpha
Helix 12	AB3	B	232	276	Right-handed alpha
Helix 13	AB4	C	36	51	Right-handed alpha
Helix 14	AB5	C	165	170	Right-handed alpha
Helix 15	AB6	C	200	204	Right-handed 310
Helix 16	AB7	C	207	216	Right-handed alpha
Helix 17	AB8	C	231	238	Right-handed alpha
Helix 18	AB9	C	239	245	Right-handed alpha
Helix 19	AC1	C	249	277	Right-handed alpha
Helix 20	AC2	C	278	285	Right-handed 310
Helix 21	AC3	C	288	291	Right-handed 310
Helix 22	AC4	C	292	299	Right-handed alpha
Helix 23	AC5	C	302	382	Right-handed alpha
Helix 24	AC6	C	383	430	Right-handed alpha
Helix 25	AC7	C	430	472	Right-handed alpha
Helix 26	AC8	C	481	493	Right-handed alpha
Helix 27	AC9	C	493	570	Right-handed alpha
Helix 28	AD1	D	16	20	Right-handed 310
Helix 29	AD2	D	33	112	Right-handed alpha
Helix 30	AD3	D	114	290	Right-handed alpha
Helix 31	AD4	E	24	35	Right-handed alpha
Helix 32	AD5	E	38	141	Right-handed alpha
Helix 33	AD6	E	143	238	Right-handed alpha
Helix 34	AD7	E	239	241	Right-handed 310
Helix 35	AD8	E	242	291	Right-handed alpha
Helix 36	AD9	F	2	11	Right-handed alpha
Helix 37	AE1	F	25	37	Right-handed alpha
Helix 38	AE2	F	48	59	Right-handed alpha
Helix 39	AE3	F	64	72	Right-handed alpha
Helix 40	AE4	F	74	87	Right-handed alpha
Helix 41	AE5	F	94	98	Right-handed 310
Helix 42	AE6	F	101	118	Right-handed alpha
Helix 43	AE7	F	123	138	Right-handed alpha
Helix 44	AE8	F	154	161	Right-handed alpha
Helix 45	AE9	F	182	186	Right-handed 310
Helix 46	AF1	F	189	202	Right-handed alpha
Helix 47	AF2	F	217	231	Right-handed alpha
Helix 48	AF3	F	245	259	Right-handed alpha
Helix 49	AF4	F	273	287	Right-handed alpha
Helix 50	AF5	F	301	312	Right-handed alpha
Helix 51	AF6	F	329	341	Right-handed alpha
Helix 52	AF7	F	358	360	Right-handed 310
Helix 53	AF8	F	361	370	Right-handed alpha
Helix 54	AF9	F	388	398	Right-handed alpha
Helix 55	AG1	F	399	404	Right-handed 310
Helix 56	AG2	F	406	424	Right-handed alpha
Helix 57	AG3	F	430	458	Right-handed alpha
Helix 58	AG4	G	16	33	Right-handed alpha
Helix 59	AG5	G	37	51	Right-handed alpha
Helix 60	AG6	G	64	77	Right-handed alpha
Helix 61	AG7	G	93	109	Right-handed alpha
Helix 62	AG8	G	122	133	Right-handed alpha
Helix 63	AG9	G	151	164	Right-handed alpha
Helix 64	AH1	G	183	192	Right-handed alpha
Helix 65	AH2	G	208	221	Right-handed alpha
Helix 66	AH3	G	245	250	Right-handed 310
Helix 67	AH4	G	251	256	Right-handed alpha
Helix 68	AH5	G	257	277	Right-handed alpha
Helix 69	AH6	G	291	303	Right-handed alpha
Helix 70	AH7	G	318	331	Right-handed alpha
Helix 71	AH8	H	35	39	Right-handed 310
Helix 72	AH9	H	44	54	Right-handed alpha
Helix 73	AI1	H	60	64	Right-handed 310
Helix 74	AI2	H	67	87	Right-handed alpha
Helix 75	AI3	H	109	114	Right-handed 310
Helix 76	AI4	H	126	136	Right-handed alpha
Helix 77	AI5	H	155	163	Right-handed alpha
Helix 78	AI6	H	166	182	Right-handed alpha
Helix 79	AI7	H	193	199	Right-handed alpha
Helix 80	AI8	H	206	210	Right-handed 310
Helix 81	AI9	H	241	264	Right-handed alpha
Helix 82	AJ1	H	338	342	Right-handed 310
Helix 83	AJ2	H	359	364	Right-handed alpha
Helix 84	AJ3	H	365	369	Right-handed 310
Helix 85	AJ4	H	379	383	Right-handed 310
Helix 86	AJ5	H	388	398	Right-handed alpha
Helix 87	AJ6	H	414	421	Right-handed alpha
Helix 88	AJ7	H	655	658	Right-handed 310
Helix 89	AJ8	H	659	697	Right-handed alpha
Helix 90	AJ9	H	704	718	Right-handed alpha
Helix 91	AK1	H	752	797	Right-handed alpha
Helix 92	AK2	H	801	842	Right-handed alpha
Helix 93	AK3	H	843	852	Right-handed 310
Helix 94	AK4	I	7	29	Right-handed alpha
Helix 95	AK5	I	40	49	Right-handed alpha
Helix 96	AK6	I	54	61	Right-handed alpha
Helix 97	AK7	I	61	67	Right-handed alpha
Helix 98	AK8	I	77	91	Right-handed alpha
Helix 99	AK9	I	97	109	Right-handed alpha
Helix 100	AL1	I	118	128	Right-handed alpha
Helix 101	AL2	I	133	145	Right-handed alpha
Helix 102	AL3	I	156	176	Right-handed alpha
Helix 103	AL4	J	2	29	Right-handed alpha
Helix 104	AL5	J	34	65	Right-handed alpha
Helix 105	AL6	J	70	102	Right-handed alpha
Helix 106	AL7	J	104	133	Right-handed alpha
Helix 107	AL8	J	134	150	Right-handed alpha
Helix 108	AL9	J	153	235	Right-handed alpha
Helix 109	AM1	J	236	295	Right-handed alpha
Helix 110	AM2	J	297	349	Right-handed alpha
Helix 111	AM3	K	32	49	Right-handed alpha
Helix 112	AM4	K	54	76	Right-handed alpha
Helix 113	AM5	K	78	84	Right-handed alpha
Helix 114	AM6	K	95	102	Right-handed alpha
Helix 115	AM7	K	103	130	Right-handed alpha
Helix 116	AM8	K	138	165	Right-handed alpha
Helix 117	AM9	K	166	177	Right-handed alpha
Helix 118	AN1	K	181	203	Right-handed alpha
Helix 119	AN2	K	205	214	Right-handed alpha
Helix 120	AN3	K	214	360	Right-handed alpha
Helix 121	AN4	K	362	412	Right-handed alpha
Helix 122	AN5	L	2	34	Right-handed alpha
Helix 123	AN6	L	42	70	Right-handed alpha
Helix 124	AN7	L	73	101	Right-handed alpha
Helix 125	AN8	L	116	123	Right-handed alpha
Helix 126	AN9	L	126	131	Right-handed 310
Helix 127	AO1	L	136	141	Right-handed alpha
Helix 128	AO2	L	142	161	Right-handed alpha
Helix 129	AO3	L	180	222	Right-handed alpha
Helix 130	AO4	L	229	264	Right-handed alpha
Helix 131	AO5	L	278	340	Right-handed alpha
Helix 132	AO6	L	349	356	Right-handed alpha
Helix 133	AO7	L	358	378	Right-handed alpha
Helix 134	AO8	L	379	381	Right-handed 310
Helix 135	AO9	L	391	401	Right-handed alpha
Helix 136	AP1	L	406	423	Right-handed alpha
Helix 137	AP2	L	437	472	Right-handed alpha
Helix 138	AP3	L	497	502	Right-handed alpha
Helix 139	AP4	L	505	516	Right-handed alpha
Helix 140	AP5	L	526	530	Right-handed 310
Helix 141	AP6	L	537	554	Right-handed alpha
Helix 142	AP7	L	557	567	Right-handed alpha
Helix 143	AP8	L	576	594	Right-handed alpha
Helix 144	AP9	L	594	601	Right-handed alpha
Helix 145	AQ1	L	616	629	Right-handed alpha
Helix 146	AQ2	L	636	641	Right-handed alpha
Helix 147	AQ3	L	646	664	Right-handed alpha
Helix 148	AQ4	L	674	679	Right-handed alpha
Helix 149	AQ5	L	689	694	Right-handed 310
Helix 150	AQ6	L	695	706	Right-handed alpha
Helix 151	AQ7	L	722	726	Right-handed 310
Helix 152	AQ8	L	727	735	Right-handed alpha
Helix 153	AQ9	L	745	760	Right-handed alpha
Helix 154	AR1	L	769	777	Right-handed alpha
Helix 155	AR2	L	781	793	Right-handed alpha
Helix 156	AR3	L	794	800	Right-handed alpha
Helix 157	AR4	L	807	810	Right-handed 310
Helix 158	AR5	L	811	818	Right-handed alpha
Helix 159	AR6	L	822	837	Right-handed alpha
Helix 160	AR7	L	838	846	Right-handed alpha
Helix 161	AR8	P	113	134	Right-handed alpha
Helix 162	AR9	P	143	158	Right-handed alpha
Helix 163	AS1	P	163	175	Right-handed alpha
Helix 164	AS2	P	196	213	Right-handed alpha
Helix 165	AS3	P	214	223	Right-handed alpha
Helix 166	AS4	P	296	298	Right-handed 310
Helix 167	AS5	P	333	336	Right-handed 310
Helix 168	AS6	P	366	406	Right-handed alpha
Helix 169	AS7	Q	27	39	Right-handed alpha
Helix 170	AS8	Q	43	58	Right-handed alpha
Helix 171	AS9	Q	66	77	Right-handed alpha
Helix 172	AT1	Q	82	96	Right-handed alpha
Helix 173	AT2	Q	104	142	Right-handed alpha
Helix 174	AT3	Q	147	151	Right-handed 310
Helix 175	AT4	Q	155	164	Right-handed alpha
Helix 176	AT5	Q	171	183	Right-handed alpha
Helix 177	AT6	Q	191	202	Right-handed alpha
Helix 178	AT7	R	22	42	Right-handed alpha
Helix 179	AT8	R	43	50	Right-handed alpha
Helix 180	AT9	R	51	54	Right-handed 310
Helix 181	AU1	R	66	77	Right-handed alpha
Helix 182	AU2	R	82	96	Right-handed alpha
Helix 183	AU3	R	104	143	Right-handed alpha
Helix 184	AU4	R	147	151	Right-handed 310
Helix 185	AU5	R	160	164	Right-handed 310
Helix 186	AU6	R	171	175	Right-handed 310
Helix 187	AU7	R	176	183	Right-handed alpha
Helix 188	AU8	R	192	200	Right-handed alpha
Helix 189	AU9	S	12	56	Right-handed alpha
Helix 190	AV1	S	58	89	Right-handed alpha
Helix 191	AV2	S	90	168	Right-handed alpha
Helix 192	AV3	S	171	183	Right-handed alpha
Helix 193	AV4	i	7	29	Right-handed alpha
Helix 194	AV5	i	38	40	Right-handed 310
Helix 195	AV6	i	41	49	Right-handed alpha
Helix 196	AV7	i	54	62	Right-handed alpha
Helix 197	AV8	i	62	67	Right-handed alpha
Helix 198	AV9	i	77	91	Right-handed alpha
Helix 199	AW1	i	97	109	Right-handed alpha
Helix 200	AW2	i	118	128	Right-handed alpha
Helix 201	AW3	i	133	145	Right-handed alpha
Helix 202	AW4	i	156	176	Right-handed alpha
Helix 203	AW5	s	12	168	Right-handed alpha
Helix 204	AW6	s	171	183	Right-handed alpha

There are 19 sheets in PDB entry 8TH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	68	first strand
Strand 2	C	88	90	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	154	156	parallel
Strand 3	C	193	195	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	149	first strand
Strand 2	F	167	172	parallel
Strand 3	F	209	210	parallel
Strand 4	F	236	238	parallel
Strand 5	F	264	266	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	294	first strand
Strand 2	F	320	322	parallel
Strand 3	F	349	351	parallel
Strand 4	F	377	379	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	59	first strand
Strand 2	G	85	89	parallel
Strand 3	G	116	117	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	145	first strand
Strand 2	G	171	173	parallel
Strand 3	G	200	202	parallel
Strand 4	G	228	230	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	308	310	first strand
Strand 2	H	300	303	anti-parallel
Strand 3	H	284	289	anti-parallel
Strand 4	H	185	191	anti-parallel
Strand 5	H	319	324	anti-parallel
Strand 6	H	329	332	anti-parallel
Strand 7	H	353	355	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	426	431	first strand
Strand 2	H	434	439	anti-parallel
Strand 3	H	448	454	anti-parallel
Strand 4	H	466	470	anti-parallel
Strand 5	H	479	483	anti-parallel
Strand 6	H	488	492	anti-parallel
Strand 7	H	512	516	anti-parallel
Strand 8	H	520	524	anti-parallel
Strand 9	H	536	539	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	544	548	first strand
Strand 2	H	556	563	anti-parallel
Strand 3	H	588	595	anti-parallel
Strand 4	H	607	613	anti-parallel
Strand 5	H	618	623	anti-parallel
Strand 6	H	633	638	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	38	first strand
Strand 2	I	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	115	117	first strand
Strand 2	I	153	155	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	519	520	first strand
Strand 2	L	631	634	anti-parallel
Strand 3	L	667	671	parallel
Strand 4	L	714	720	parallel
Strand 5	L	606	610	parallel
Strand 6	L	737	740	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	180	188	first strand
Strand 2	P	239	247	anti-parallel
Strand 3	P	228	235	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	251	260	first strand
Strand 2	P	263	270	anti-parallel
Strand 3	P	308	311	anti-parallel
Strand 4	P	300	303	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	275	276	first strand
Strand 2	P	327	331	anti-parallel
Strand 3	P	354	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	280	283	first strand
Strand 2	P	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	153	155	first strand
Strand 2	R	189	191	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	36	37	first strand
Strand 2	i	75	76	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	115	117	first strand
Strand 2	i	153	155	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TH8