Analysis of interatomic Contacts of Structural Units in PDB entry:
8THB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8THB entry

There are 5 chains in PDB entry 8THB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 184GLU 781
B
 SER 6ALA 323
C
 GLU 11THR 335
D
 LEU 22LEU 353
E
 SER 2ASP 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 8THB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
203 209Right-handed alpha
Helix 2
AA2
A
240 245Right-handed alpha
Helix 3
AA3
A
256 274Right-handed alpha
Helix 4
AA4
A
344 356Right-handed alpha
Helix 5
AA5
A
373 387Right-handed alpha
Helix 6
AA6
A
418 429Right-handed alpha
Helix 7
AA7
A
445 455Right-handed alpha
Helix 8
AA8
A
465 480Right-handed alpha
Helix 9
AA9
A
485 496Right-handed alpha
Helix 10
AB1
A
499 511Right-handed alpha
Helix 11
AB2
A
535 557Right-handed alpha
Helix 12
AB3
A
572 579Right-handed alpha
Helix 13
AB4
A
585 590Right-handed alpha
Helix 14
AB5
A
616 627Right-handed alpha
Helix 15
AB6
A
629 637Right-handed alpha
Helix 16
AB7
A
645 659Right-handed alpha
Helix 17
AB8
A
660 662Right-handed 310
Helix 18
AB9
A
700 708Right-handed alpha
Helix 19
AC1
A
709 716Right-handed alpha
Helix 20
AC2
A
716 731Right-handed alpha
Helix 21
AC3
A
773 780Right-handed alpha
Helix 22
AC4
B
10 15Right-handed alpha
Helix 23
AC5
B
26 40Right-handed alpha
Helix 24
AC6
B
54 68Right-handed alpha
Helix 25
AC7
B
70 75Right-handed alpha
Helix 26
AC8
B
85 99Right-handed alpha
Helix 27
AC9
B
116 119Right-handed 310
Helix 28
AD1
B
120 127Right-handed alpha
Helix 29
AD2
B
127 134Right-handed alpha
Helix 30
AD3
B
151 156Right-handed alpha
Helix 31
AD4
B
167 183Right-handed alpha
Helix 32
AD5
B
187 199Right-handed alpha
Helix 33
AD6
B
201 217Right-handed alpha
Helix 34
AD7
B
220 226Right-handed alpha
Helix 35
AD8
B
232 241Right-handed alpha
Helix 36
AD9
B
244 256Right-handed alpha
Helix 37
AE1
B
262 276Right-handed alpha
Helix 38
AE2
B
281 302Right-handed alpha
Helix 39
AE3
B
305 323Right-handed alpha
Helix 40
AE4
C
14 19Right-handed alpha
Helix 41
AE5
C
23 27Right-handed 310
Helix 42
AE6
C
30 44Right-handed alpha
Helix 43
AE7
C
58 72Right-handed alpha
Helix 44
AE8
C
74 78Right-handed alpha
Helix 45
AE9
C
89 103Right-handed alpha
Helix 46
AF1
C
118 122Right-handed 310
Helix 47
AF2
C
123 137Right-handed alpha
Helix 48
AF3
C
154 159Right-handed alpha
Helix 49
AF4
C
170 183Right-handed alpha
Helix 50
AF5
C
190 202Right-handed alpha
Helix 51
AF6
C
204 219Right-handed alpha
Helix 52
AF7
C
228 237Right-handed alpha
Helix 53
AF8
C
240 254Right-handed alpha
Helix 54
AF9
C
255 271Right-handed alpha
Helix 55
AG1
C
273 286Right-handed alpha
Helix 56
AG2
C
292 312Right-handed alpha
Helix 57
AG3
C
315 334Right-handed alpha
Helix 58
AG4
D
26 31Right-handed alpha
Helix 59
AG5
D
42 56Right-handed alpha
Helix 60
AG6
D
70 83Right-handed alpha
Helix 61
AG7
D
84 92Right-handed alpha
Helix 62
AG8
D
105 116Right-handed alpha
Helix 63
AG9
D
122 126Right-handed 310
Helix 64
AH1
D
151 160Right-handed alpha
Helix 65
AH2
D
193 208Right-handed alpha
Helix 66
AH3
D
215 225Right-handed alpha
Helix 67
AH4
D
227 246Right-handed alpha
Helix 68
AH5
D
252 260Right-handed alpha
Helix 69
AH6
D
264 278Right-handed alpha
Helix 70
AH7
D
279 292Right-handed alpha
Helix 71
AH8
D
296 311Right-handed alpha
Helix 72
AH9
D
315 335Right-handed alpha
Helix 73
AI1
D
338 353Right-handed alpha
Helix 74
AI2
E
3 8Right-handed alpha
Helix 75
AI3
E
19 32Right-handed alpha
Helix 76
AI4
E
33 36Right-handed 310
Helix 77
AI5
E
48 61Right-handed alpha
Helix 78
AI6
E
62 67Right-handed 310
Helix 79
AI7
E
101 103Right-handed 310
Helix 80
AI8
E
104 119Right-handed alpha
Helix 81
AI9
E
143 146Right-handed 310
Helix 82
AJ1
E
147 159Right-handed alpha
Helix 83
AJ2
E
178 184Right-handed alpha
Helix 84
AJ3
E
194 210Right-handed alpha
Helix 85
AJ4
E
216 225Right-handed alpha
Helix 86
AJ5
E
229 244Right-handed alpha
Helix 87
AJ6
E
257 273Right-handed alpha
Helix 88
AJ7
E
275 292Right-handed alpha
Helix 89
AJ8
E
295 309Right-handed alpha
Helix 90
AJ9
E
314 334Right-handed alpha
Helix 91
AK1
E
337 354Right-handed alpha
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There are 8 sheets in PDB entry 8THB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
482 483anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 366first strand
Strand 2
A
400 405parallel
Strand 3
A
434 437parallel
Strand 4
A
334 337parallel
Strand 5
A
458 460parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 601first strand
Strand 2
E
69 76parallel
Strand 3
E
82 89anti-parallel
Strand 4
E
93 96anti-parallel
Strand 5
E
136 141parallel
Strand 6
E
165 171parallel
Strand 7
E
39 42parallel
Strand 8
E
186 189parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 114first strand
Strand 2
B
138 144parallel
Strand 3
B
45 48parallel
Strand 4
B
159 162parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 83first strand
Strand 2
C
112 117parallel
Strand 3
C
141 147parallel
Strand 4
C
49 52parallel
Strand 5
C
162 165parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 64first strand
Strand 2
D
187 188parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 140first strand
Strand 2
D
164 169parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 213first strand
Strand 2
E
247 248parallel
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