Analysis of interatomic Contacts of Structural Units in PDB entry:
8THD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8THD entry

There are 8 chains in PDB entry 8THD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 184	GLU 781
B	SER 6	ALA 323
C	GLU 11	THR 335
D	LEU 22	LEU 353
E	SER 2	ASP 354
F	MET 1	PHE 254
G	MET 1	ASP 256
H	MET 1	ASN 255

There are106 helices in PDB entry 8THD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	203	209	Right-handed alpha
Helix 2	AA2	A	240	245	Right-handed alpha
Helix 3	AA3	A	256	276	Right-handed alpha
Helix 4	AA4	A	344	356	Right-handed alpha
Helix 5	AA5	A	373	387	Right-handed alpha
Helix 6	AA6	A	418	429	Right-handed alpha
Helix 7	AA7	A	445	455	Right-handed alpha
Helix 8	AA8	A	465	481	Right-handed alpha
Helix 9	AA9	A	485	496	Right-handed alpha
Helix 10	AB1	A	499	511	Right-handed alpha
Helix 11	AB2	A	535	557	Right-handed alpha
Helix 12	AB3	A	572	581	Right-handed alpha
Helix 13	AB4	A	585	592	Right-handed alpha
Helix 14	AB5	A	616	629	Right-handed alpha
Helix 15	AB6	A	629	639	Right-handed alpha
Helix 16	AB7	A	645	661	Right-handed alpha
Helix 17	AB8	A	700	708	Right-handed alpha
Helix 18	AB9	A	709	716	Right-handed alpha
Helix 19	AC1	A	716	735	Right-handed alpha
Helix 20	AC2	A	773	781	Right-handed alpha
Helix 21	AC3	B	10	15	Right-handed alpha
Helix 22	AC4	B	26	40	Right-handed alpha
Helix 23	AC5	B	54	68	Right-handed alpha
Helix 24	AC6	B	70	74	Right-handed alpha
Helix 25	AC7	B	85	99	Right-handed alpha
Helix 26	AC8	B	116	119	Right-handed 310
Helix 27	AC9	B	120	134	Right-handed alpha
Helix 28	AD1	B	146	150	Right-handed 310
Helix 29	AD2	B	151	156	Right-handed alpha
Helix 30	AD3	B	167	183	Right-handed alpha
Helix 31	AD4	B	187	199	Right-handed alpha
Helix 32	AD5	B	201	217	Right-handed alpha
Helix 33	AD6	B	220	225	Right-handed alpha
Helix 34	AD7	B	232	242	Right-handed alpha
Helix 35	AD8	B	244	255	Right-handed alpha
Helix 36	AD9	B	262	277	Right-handed alpha
Helix 37	AE1	B	281	302	Right-handed alpha
Helix 38	AE2	B	305	322	Right-handed alpha
Helix 39	AE3	C	14	19	Right-handed alpha
Helix 40	AE4	C	23	27	Right-handed 310
Helix 41	AE5	C	31	44	Right-handed alpha
Helix 42	AE6	C	58	72	Right-handed alpha
Helix 43	AE7	C	74	78	Right-handed alpha
Helix 44	AE8	C	88	102	Right-handed alpha
Helix 45	AE9	C	123	137	Right-handed alpha
Helix 46	AF1	C	149	153	Right-handed 310
Helix 47	AF2	C	154	159	Right-handed alpha
Helix 48	AF3	C	170	186	Right-handed alpha
Helix 49	AF4	C	190	202	Right-handed alpha
Helix 50	AF5	C	204	219	Right-handed alpha
Helix 51	AF6	C	228	236	Right-handed alpha
Helix 52	AF7	C	240	254	Right-handed alpha
Helix 53	AF8	C	255	271	Right-handed alpha
Helix 54	AF9	C	273	288	Right-handed alpha
Helix 55	AG1	C	293	313	Right-handed alpha
Helix 56	AG2	C	315	334	Right-handed alpha
Helix 57	AG3	D	26	31	Right-handed alpha
Helix 58	AG4	D	42	55	Right-handed alpha
Helix 59	AG5	D	71	83	Right-handed alpha
Helix 60	AG6	D	84	92	Right-handed alpha
Helix 61	AG7	D	105	115	Right-handed alpha
Helix 62	AG8	D	153	160	Right-handed alpha
Helix 63	AG9	D	193	208	Right-handed alpha
Helix 64	AH1	D	215	225	Right-handed alpha
Helix 65	AH2	D	227	246	Right-handed alpha
Helix 66	AH3	D	252	261	Right-handed alpha
Helix 67	AH4	D	264	278	Right-handed alpha
Helix 68	AH5	D	279	292	Right-handed alpha
Helix 69	AH6	D	296	310	Right-handed alpha
Helix 70	AH7	D	315	335	Right-handed alpha
Helix 71	AH8	D	338	353	Right-handed alpha
Helix 72	AH9	E	3	8	Right-handed alpha
Helix 73	AI1	E	19	32	Right-handed alpha
Helix 74	AI2	E	48	61	Right-handed alpha
Helix 75	AI3	E	62	67	Right-handed 310
Helix 76	AI4	E	97	105	Right-handed 310
Helix 77	AI5	E	106	119	Right-handed alpha
Helix 78	AI6	E	143	146	Right-handed 310
Helix 79	AI7	E	147	161	Right-handed alpha
Helix 80	AI8	E	178	184	Right-handed alpha
Helix 81	AI9	E	194	210	Right-handed alpha
Helix 82	AJ1	E	216	227	Right-handed alpha
Helix 83	AJ2	E	229	245	Right-handed alpha
Helix 84	AJ3	E	257	273	Right-handed alpha
Helix 85	AJ4	E	275	292	Right-handed alpha
Helix 86	AJ5	E	295	308	Right-handed alpha
Helix 87	AJ6	E	314	334	Right-handed alpha
Helix 88	AJ7	E	337	354	Right-handed alpha
Helix 89	AJ8	F	8	19	Right-handed alpha
Helix 90	AJ9	F	72	81	Right-handed alpha
Helix 91	AK1	F	141	155	Right-handed alpha
Helix 92	AK2	F	163	166	Right-handed 310
Helix 93	AK3	F	209	216	Right-handed alpha
Helix 94	AK4	F	217	221	Right-handed 310
Helix 95	AK5	G	9	21	Right-handed alpha
Helix 96	AK6	G	55	57	Right-handed 310
Helix 97	AK7	G	72	80	Right-handed alpha
Helix 98	AK8	G	141	152	Right-handed alpha
Helix 99	AK9	G	209	217	Right-handed alpha
Helix 100	AL1	G	218	221	Right-handed 310
Helix 101	AL2	H	9	18	Right-handed alpha
Helix 102	AL3	H	72	80	Right-handed alpha
Helix 103	AL4	H	141	152	Right-handed alpha
Helix 104	AL5	H	190	194	Right-handed 310
Helix 105	AL6	H	209	216	Right-handed alpha
Helix 106	AL7	H	217	219	Right-handed 310

There are 16 sheets in PDB entry 8THD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	482	483	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	401	405	parallel
Strand 3	A	434	438	parallel
Strand 4	A	334	338	parallel
Strand 5	A	458	461	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	601	first strand
Strand 2	E	69	76	parallel
Strand 3	E	82	89	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	109	114	parallel
Strand 3	B	138	144	parallel
Strand 4	B	45	48	parallel
Strand 5	B	159	162	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	162	165	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	83	first strand
Strand 2	C	112	117	parallel
Strand 3	C	141	143	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	187	188	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	140	first strand
Strand 2	D	164	169	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	96	first strand
Strand 2	E	136	141	parallel
Strand 3	E	165	171	parallel
Strand 4	E	39	42	parallel
Strand 5	E	186	189	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	60	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	111	117	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	35	40	anti-parallel
Strand 4	F	46	52	anti-parallel
Strand 5	F	245	250	anti-parallel
Strand 6	F	235	240	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	208	first strand
Strand 2	F	157	161	anti-parallel
Strand 3	F	167	172	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	G	112	117	anti-parallel
Strand 6	G	98	104	anti-parallel
Strand 7	G	87	92	anti-parallel
Strand 8	G	2	5	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	250	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	206	208	first strand
Strand 2	G	157	163	anti-parallel
Strand 3	G	166	172	anti-parallel
Strand 4	G	176	182	anti-parallel
Strand 5	H	110	117	anti-parallel
Strand 6	H	98	104	anti-parallel
Strand 7	H	87	92	anti-parallel
Strand 8	H	2	6	anti-parallel
Strand 9	H	57	60	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	47	53	anti-parallel
Strand 5	H	245	250	anti-parallel
Strand 6	H	233	240	anti-parallel
Strand 7	H	224	230	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	197	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	182	first strand
Strand 2	H	167	172	anti-parallel
Strand 3	H	157	162	anti-parallel
Strand 4	H	203	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8THD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8THD