Analysis of interatomic Contacts of Structural Units in PDB entry:
8THF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8THF entry

There are 3 chains in PDB entry 8THF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	ASP 949
B	GLN 14	ASP 949
C	GLN 14	ASP 949

There are 47 helices in PDB entry 8THF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	433	440	Right-handed 310
Helix 3	AA3	A	540	546	Right-handed alpha
Helix 4	AA4	A	549	558	Right-handed alpha
Helix 5	AA5	A	561	586	Right-handed alpha
Helix 6	AA6	A	619	629	Right-handed alpha
Helix 7	AA7	A	652	658	Right-handed alpha
Helix 8	AA8	A	669	687	Right-handed alpha
Helix 9	AA9	A	689	693	Right-handed 310
Helix 10	AB1	A	700	711	Right-handed alpha
Helix 11	AB2	A	716	721	Right-handed alpha
Helix 12	AB3	A	722	743	Right-handed alpha
Helix 13	AB4	A	748	768	Right-handed alpha
Helix 14	AB5	A	779	785	Right-handed alpha
Helix 15	AB6	A	792	835	Right-handed alpha
Helix 16	AB7	B	291	301	Right-handed alpha
Helix 17	AB8	B	540	545	Right-handed alpha
Helix 18	AB9	B	549	556	Right-handed alpha
Helix 19	AC1	B	557	561	Right-handed 310
Helix 20	AC2	B	562	586	Right-handed alpha
Helix 21	AC3	B	619	628	Right-handed alpha
Helix 22	AC4	B	652	658	Right-handed alpha
Helix 23	AC5	B	669	687	Right-handed alpha
Helix 24	AC6	B	689	693	Right-handed 310
Helix 25	AC7	B	700	711	Right-handed alpha
Helix 26	AC8	B	716	721	Right-handed alpha
Helix 27	AC9	B	722	743	Right-handed alpha
Helix 28	AD1	B	748	768	Right-handed alpha
Helix 29	AD2	B	779	785	Right-handed alpha
Helix 30	AD3	B	788	835	Right-handed alpha
Helix 31	AD4	B	944	949	Right-handed alpha
Helix 32	AD5	C	291	301	Right-handed alpha
Helix 33	AD6	C	419	423	Right-handed 310
Helix 34	AD7	C	540	546	Right-handed alpha
Helix 35	AD8	C	549	557	Right-handed alpha
Helix 36	AD9	C	563	586	Right-handed alpha
Helix 37	AE1	C	619	628	Right-handed alpha
Helix 38	AE2	C	653	658	Right-handed alpha
Helix 39	AE3	C	669	687	Right-handed alpha
Helix 40	AE4	C	689	693	Right-handed 310
Helix 41	AE5	C	700	711	Right-handed alpha
Helix 42	AE6	C	715	721	Right-handed alpha
Helix 43	AE7	C	722	743	Right-handed alpha
Helix 44	AE8	C	748	768	Right-handed alpha
Helix 45	AE9	C	779	785	Right-handed alpha
Helix 46	AF1	C	788	835	Right-handed alpha
Helix 47	AF2	C	944	949	Right-handed alpha

There are 42 sheets in PDB entry 8THF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	88	94	anti-parallel
Strand 5	A	183	192	anti-parallel
Strand 6	A	195	204	anti-parallel
Strand 7	A	219	226	anti-parallel
Strand 8	A	36	37	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	114	119	anti-parallel
Strand 5	A	124	129	anti-parallel
Strand 6	A	164	166	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	138	first strand
Strand 2	A	153	158	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	312	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	412	415	anti-parallel
Strand 4	A	451	454	anti-parallel
Strand 5	A	445	448	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	341	345	parallel
Strand 3	A	350	354	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	B	42	43	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	380	first strand
Strand 2	A	387	389	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	494	499	parallel
Strand 3	A	473	478	anti-parallel
Strand 4	A	467	470	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	507	first strand
Strand 2	B	590	593	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	518	first strand
Strand 2	A	875	880	anti-parallel
Strand 3	A	897	900	anti-parallel
Strand 4	A	905	908	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	531	first strand
Strand 2	A	862	872	anti-parallel
Strand 3	A	850	859	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	539	first strand
Strand 2	A	661	664	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	593	first strand
Strand 2	C	504	507	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	928	first strand
Strand 2	A	889	893	anti-parallel
Strand 3	A	884	885	anti-parallel
Strand 4	A	936	937	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	B	260	266	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	183	192	anti-parallel
Strand 6	B	195	204	anti-parallel
Strand 7	B	219	226	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	101	105	anti-parallel
Strand 4	B	114	119	anti-parallel
Strand 5	B	124	129	anti-parallel
Strand 6	B	163	166	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	138	first strand
Strand 2	B	153	158	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	395	402	anti-parallel
Strand 3	B	412	414	anti-parallel
Strand 4	B	451	454	anti-parallel
Strand 5	B	445	448	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	346	first strand
Strand 2	B	349	354	anti-parallel
Strand 3	B	391	392	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	376	380	anti-parallel
Strand 3	B	368	370	anti-parallel
Strand 4	C	42	43	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	494	499	parallel
Strand 3	B	473	478	anti-parallel
Strand 4	B	467	470	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	C	590	591	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	518	first strand
Strand 2	B	875	879	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	531	first strand
Strand 2	B	862	872	anti-parallel
Strand 3	B	850	859	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	539	first strand
Strand 2	B	661	664	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	925	first strand
Strand 2	B	890	893	anti-parallel
Strand 3	B	884	885	anti-parallel
Strand 4	B	936	937	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	905	908	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	67	anti-parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	183	192	anti-parallel
Strand 6	C	195	204	anti-parallel
Strand 7	C	219	227	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	234	237	anti-parallel
Strand 3	C	102	105	anti-parallel
Strand 4	C	114	119	anti-parallel
Strand 5	C	124	131	anti-parallel
Strand 6	C	158	166	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	153	first strand
Strand 2	C	138	142	anti-parallel
Strand 3	C	241	242	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	428	first strand
Strand 2	C	308	317	anti-parallel
Strand 3	C	397	402	anti-parallel
Strand 4	C	412	415	anti-parallel
Strand 5	C	452	454	anti-parallel
Strand 6	C	445	447	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	352	353	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	371	first strand
Strand 2	C	375	380	anti-parallel
Strand 3	C	387	389	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	C	494	499	parallel
Strand 3	C	473	478	anti-parallel
Strand 4	C	467	470	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	518	first strand
Strand 2	C	875	879	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	531	first strand
Strand 2	C	862	872	anti-parallel
Strand 3	C	850	859	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	537	first strand
Strand 2	C	663	664	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	923	925	first strand
Strand 2	C	890	893	anti-parallel
Strand 3	C	884	885	anti-parallel
Strand 4	C	936	937	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	897	899	first strand
Strand 2	C	906	908	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8THF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8THF