Analysis of interatomic Contacts of Structural Units in PDB entry:
8THL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8THL entry

There are 5 chains in PDB entry 8THL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	VAL 246
B	GLU 3	ASN 340
G	ILE 9	ARG 62
F	ASP 1	LEU 235
R	LEU 33	CYS 328

There are 30 helices in PDB entry 8THL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	31	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	95	101	Right-handed 310
Helix 4	AA4	A	117	130	Right-handed alpha
Helix 5	AA5	A	131	135	Right-handed 310
Helix 6	AA6	A	145	156	Right-handed alpha
Helix 7	AA7	A	159	164	Right-handed alpha
Helix 8	AA8	A	165	168	Right-handed 310
Helix 9	AA9	A	184	203	Right-handed alpha
Helix 10	AB1	A	222	243	Right-handed alpha
Helix 11	AB2	B	4	25	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	B	35	37	Right-handed 310
Helix 14	AB5	G	10	24	Right-handed alpha
Helix 15	AB6	G	29	44	Right-handed alpha
Helix 16	AB7	G	45	48	Right-handed 310
Helix 17	AB8	F	28	32	Right-handed 310
Helix 18	AB9	F	53	56	Right-handed 310
Helix 19	AC1	R	34	54	Right-handed alpha
Helix 20	AC2	R	59	90	Right-handed alpha
Helix 21	AC3	R	95	101	Right-handed alpha
Helix 22	AC4	R	101	130	Right-handed alpha
Helix 23	AC5	R	133	138	Right-handed alpha
Helix 24	AC6	R	142	163	Right-handed alpha
Helix 25	AC7	R	181	193	Right-handed alpha
Helix 26	AC8	R	193	214	Right-handed alpha
Helix 27	AC9	R	269	286	Right-handed alpha
Helix 28	AD1	R	287	298	Right-handed alpha
Helix 29	AD2	R	299	302	Right-handed 310
Helix 30	AD3	R	304	326	Right-handed alpha

There are 12 sheets in PDB entry 8THL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	76	first strand
Strand 2	A	79	86	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	105	111	parallel
Strand 5	A	138	144	parallel
Strand 6	A	215	216	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	304	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	111	119	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	129	first strand
Strand 2	F	143	149	anti-parallel
Strand 3	F	199	204	anti-parallel
Strand 4	F	191	196	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	136	first strand
Strand 2	F	231	234	parallel
Strand 3	F	213	219	anti-parallel
Strand 4	F	162	167	anti-parallel
Strand 5	F	174	178	anti-parallel
Strand 6	F	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8THL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8THL