Analysis of interatomic Contacts of Structural Units in PDB entry:
8THQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8THQ entry

There are 4 chains in PDB entry 8THQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 226ALA 348
R
 C 1 U 9
S
 G 2 U 9
B
 ALA 227GLN 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8THQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
230 238Right-handed alpha
Helix 2
AA2
A
242 246Right-handed 310
Helix 3
AA3
A
251 263Right-handed alpha
Helix 4
AA4
A
308 315Right-handed alpha
Helix 5
AA5
A
332 336Right-handed 310
Helix 6
AA6
B
230 239Right-handed alpha
Helix 7
AA7
B
242 246Right-handed 310
Helix 8
AA8
B
251 263Right-handed alpha
Helix 9
AA9
B
308 315Right-handed alpha
Helix 10
AB1
B
332 336Right-handed 310
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There are 4 sheets in PDB entry 8THQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
278 288anti-parallel
Strand 5
A
326 330anti-parallel
Strand 6
A
337 340anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
303 307anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
344 346anti-parallel
Strand 3
B
266 269anti-parallel
Strand 4
B
278 284anti-parallel
Strand 5
B
327 330anti-parallel
Strand 6
B
338 340anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 294first strand
Strand 2
B
306 307anti-parallel
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