Analysis of interatomic Contacts of Structural Units in PDB entry:
8TI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TI9 entry

There are 8 chains in PDB entry 8TI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLN 173	GLU 379
F	GLY 183	GLU 379
G	GLY 183	GLU 379
H	GLN 173	GLU 379
A	GLN 173	GLU 379
B	GLY 183	GLU 379
C	GLY 183	GLU 379
D	GLN 173	GLU 379

There are 67 helices in PDB entry 8TI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	173	197	Right-handed alpha
Helix 2	AA2	E	203	213	Right-handed alpha
Helix 3	AA3	E	214	223	Right-handed alpha
Helix 4	AA4	E	246	254	Right-handed alpha
Helix 5	AA5	E	255	258	Right-handed 310
Helix 6	AA6	E	286	318	Right-handed alpha
Helix 7	AA7	E	336	340	Right-handed 310
Helix 8	AA8	E	342	354	Right-handed alpha
Helix 9	AA9	E	363	379	Right-handed alpha
Helix 10	AB1	F	184	197	Right-handed alpha
Helix 11	AB2	F	203	214	Right-handed alpha
Helix 12	AB3	F	215	220	Right-handed alpha
Helix 13	AB4	F	230	235	Right-handed 310
Helix 14	AB5	F	286	306	Right-handed alpha
Helix 15	AB6	F	306	317	Right-handed alpha
Helix 16	AB7	F	336	340	Right-handed 310
Helix 17	AB8	F	342	356	Right-handed alpha
Helix 18	AB9	F	363	379	Right-handed alpha
Helix 19	AC1	G	184	198	Right-handed alpha
Helix 20	AC2	G	203	214	Right-handed alpha
Helix 21	AC3	G	214	220	Right-handed alpha
Helix 22	AC4	G	286	306	Right-handed alpha
Helix 23	AC5	G	306	317	Right-handed alpha
Helix 24	AC6	G	336	340	Right-handed 310
Helix 25	AC7	G	342	355	Right-handed alpha
Helix 26	AC8	G	363	379	Right-handed alpha
Helix 27	AC9	H	174	197	Right-handed alpha
Helix 28	AD1	H	203	213	Right-handed alpha
Helix 29	AD2	H	214	222	Right-handed alpha
Helix 30	AD3	H	246	254	Right-handed alpha
Helix 31	AD4	H	286	318	Right-handed alpha
Helix 32	AD5	H	336	340	Right-handed 310
Helix 33	AD6	H	342	354	Right-handed alpha
Helix 34	AD7	H	363	379	Right-handed alpha
Helix 35	AD8	A	174	197	Right-handed alpha
Helix 36	AD9	A	203	213	Right-handed alpha
Helix 37	AE1	A	214	222	Right-handed alpha
Helix 38	AE2	A	246	254	Right-handed alpha
Helix 39	AE3	A	255	258	Right-handed 310
Helix 40	AE4	A	286	318	Right-handed alpha
Helix 41	AE5	A	336	340	Right-handed 310
Helix 42	AE6	A	342	354	Right-handed alpha
Helix 43	AE7	A	363	379	Right-handed alpha
Helix 44	AE8	B	184	197	Right-handed alpha
Helix 45	AE9	B	203	214	Right-handed alpha
Helix 46	AF1	B	215	220	Right-handed alpha
Helix 47	AF2	B	286	306	Right-handed alpha
Helix 48	AF3	B	306	318	Right-handed alpha
Helix 49	AF4	B	336	340	Right-handed 310
Helix 50	AF5	B	342	355	Right-handed alpha
Helix 51	AF6	B	363	379	Right-handed alpha
Helix 52	AF7	C	184	198	Right-handed alpha
Helix 53	AF8	C	203	214	Right-handed alpha
Helix 54	AF9	C	217	221	Right-handed 310
Helix 55	AG1	C	286	306	Right-handed alpha
Helix 56	AG2	C	306	318	Right-handed alpha
Helix 57	AG3	C	336	340	Right-handed 310
Helix 58	AG4	C	342	354	Right-handed alpha
Helix 59	AG5	C	363	379	Right-handed alpha
Helix 60	AG6	D	174	197	Right-handed alpha
Helix 61	AG7	D	203	213	Right-handed alpha
Helix 62	AG8	D	214	222	Right-handed alpha
Helix 63	AG9	D	246	254	Right-handed alpha
Helix 64	AH1	D	286	318	Right-handed alpha
Helix 65	AH2	D	336	340	Right-handed 310
Helix 66	AH3	D	342	354	Right-handed alpha
Helix 67	AH4	D	363	379	Right-handed alpha

There are 8 sheets in PDB entry 8TI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	239	first strand
Strand 2	E	232	235	anti-parallel
Strand 3	E	226	229	anti-parallel
Strand 4	E	261	265	parallel
Strand 5	E	329	333	parallel
Strand 6	E	359	361	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	228	first strand
Strand 2	F	250	253	anti-parallel
Strand 3	F	260	265	anti-parallel
Strand 4	F	330	333	parallel
Strand 5	F	359	362	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	227	228	first strand
Strand 2	G	249	253	anti-parallel
Strand 3	G	260	265	anti-parallel
Strand 4	G	330	333	parallel
Strand 5	G	359	362	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	239	first strand
Strand 2	H	232	235	anti-parallel
Strand 3	H	226	229	anti-parallel
Strand 4	H	261	265	parallel
Strand 5	H	331	333	parallel
Strand 6	H	360	361	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	226	229	anti-parallel
Strand 4	A	261	265	parallel
Strand 5	A	329	333	parallel
Strand 6	A	359	361	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	250	253	anti-parallel
Strand 3	B	260	265	anti-parallel
Strand 4	B	330	333	parallel
Strand 5	B	359	362	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	228	first strand
Strand 2	C	249	253	anti-parallel
Strand 3	C	260	265	anti-parallel
Strand 4	C	330	333	parallel
Strand 5	C	360	362	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	226	229	anti-parallel
Strand 4	D	261	265	parallel
Strand 5	D	329	333	parallel
Strand 6	D	359	362	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TI9