Analysis of interatomic Contacts of Structural Units in PDB entry:
8TIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TIA entry

There are 4 chains in PDB entry 8TIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 173GLU 379
B
 GLY 183GLU 379
C
 GLY 183GLU 379
D
 GLN 173GLU 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8TIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 198Right-handed alpha
Helix 2
AA2
A
203 214Right-handed alpha
Helix 3
AA3
A
214 222Right-handed alpha
Helix 4
AA4
A
246 254Right-handed alpha
Helix 5
AA5
A
255 258Right-handed 310
Helix 6
AA6
A
286 318Right-handed alpha
Helix 7
AA7
A
336 340Right-handed 310
Helix 8
AA8
A
342 354Right-handed alpha
Helix 9
AA9
A
363 379Right-handed alpha
Helix 10
AB1
B
184 197Right-handed alpha
Helix 11
AB2
B
203 214Right-handed alpha
Helix 12
AB3
B
215 220Right-handed alpha
Helix 13
AB4
B
230 235Right-handed 310
Helix 14
AB5
B
286 306Right-handed alpha
Helix 15
AB6
B
306 318Right-handed alpha
Helix 16
AB7
B
336 340Right-handed 310
Helix 17
AB8
B
342 356Right-handed alpha
Helix 18
AB9
B
363 379Right-handed alpha
Helix 19
AC1
C
184 198Right-handed alpha
Helix 20
AC2
C
203 214Right-handed alpha
Helix 21
AC3
C
215 220Right-handed alpha
Helix 22
AC4
C
230 235Right-handed alpha
Helix 23
AC5
C
286 306Right-handed alpha
Helix 24
AC6
C
306 318Right-handed alpha
Helix 25
AC7
C
336 340Right-handed 310
Helix 26
AC8
C
342 356Right-handed alpha
Helix 27
AC9
C
363 379Right-handed alpha
Helix 28
AD1
D
174 198Right-handed alpha
Helix 29
AD2
D
203 213Right-handed alpha
Helix 30
AD3
D
214 222Right-handed alpha
Helix 31
AD4
D
246 254Right-handed alpha
Helix 32
AD5
D
286 318Right-handed alpha
Helix 33
AD6
D
342 354Right-handed alpha
Helix 34
AD7
D
363 379Right-handed alpha
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There are 4 sheets in PDB entry 8TIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
226 229anti-parallel
Strand 4
A
261 265parallel
Strand 5
A
329 333parallel
Strand 6
A
359 362parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
249 253anti-parallel
Strand 3
B
260 265anti-parallel
Strand 4
B
330 333parallel
Strand 5
B
359 362parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 228first strand
Strand 2
C
249 253anti-parallel
Strand 3
C
260 265anti-parallel
Strand 4
C
330 333parallel
Strand 5
C
359 362parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 239first strand
Strand 2
D
232 235anti-parallel
Strand 3
D
226 229anti-parallel
Strand 4
D
261 265parallel
Strand 5
D
329 333parallel
Strand 6
D
359 362parallel
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