Analysis of interatomic Contacts of Structural Units in PDB entry:
8TIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TIC entry

There are 4 chains in PDB entry 8TIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47CYS 397
B
 PRO 55CYS 397
C
 PRO 55CYS 397
D
 ALA 57CYS 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 8TIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 71Right-handed alpha
Helix 2
AA2
A
101 106Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
113 122Right-handed alpha
Helix 5
AA5
A
134 139Right-handed 310
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
186 190Right-handed 310
Helix 8
AA8
A
194 206Right-handed alpha
Helix 9
AA9
A
216 218Right-handed 310
Helix 10
AB1
A
219 235Right-handed alpha
Helix 11
AB2
A
251 261Right-handed alpha
Helix 12
AB3
A
263 269Right-handed alpha
Helix 13
AB4
A
313 324Right-handed alpha
Helix 14
AB5
A
331 343Right-handed alpha
Helix 15
AB6
A
365 372Right-handed alpha
Helix 16
AB7
A
379 391Right-handed alpha
Helix 17
AB8
A
392 397Right-handed alpha
Helix 18
AB9
B
57 70Right-handed alpha
Helix 19
AC1
B
71 76Right-handed alpha
Helix 20
AC2
B
101 106Right-handed alpha
Helix 21
AC3
B
108 112Right-handed 310
Helix 22
AC4
B
113 122Right-handed alpha
Helix 23
AC5
B
134 139Right-handed 310
Helix 24
AC6
B
154 164Right-handed alpha
Helix 25
AC7
B
186 190Right-handed 310
Helix 26
AC8
B
194 206Right-handed alpha
Helix 27
AC9
B
216 218Right-handed 310
Helix 28
AD1
B
219 235Right-handed alpha
Helix 29
AD2
B
251 261Right-handed alpha
Helix 30
AD3
B
263 269Right-handed alpha
Helix 31
AD4
B
313 324Right-handed alpha
Helix 32
AD5
B
331 343Right-handed alpha
Helix 33
AD6
B
360 365Right-handed 310
Helix 34
AD7
B
366 371Right-handed alpha
Helix 35
AD8
B
379 392Right-handed alpha
Helix 36
AD9
B
392 397Right-handed alpha
Helix 37
AE1
C
57 71Right-handed alpha
Helix 38
AE2
C
71 76Right-handed alpha
Helix 39
AE3
C
100 106Right-handed alpha
Helix 40
AE4
C
108 112Right-handed 310
Helix 41
AE5
C
113 122Right-handed alpha
Helix 42
AE6
C
134 139Right-handed 310
Helix 43
AE7
C
154 164Right-handed alpha
Helix 44
AE8
C
186 190Right-handed 310
Helix 45
AE9
C
194 206Right-handed alpha
Helix 46
AF1
C
216 218Right-handed 310
Helix 47
AF2
C
219 235Right-handed alpha
Helix 48
AF3
C
251 261Right-handed alpha
Helix 49
AF4
C
313 324Right-handed alpha
Helix 50
AF5
C
331 343Right-handed alpha
Helix 51
AF6
C
365 370Right-handed 310
Helix 52
AF7
C
379 391Right-handed alpha
Helix 53
AF8
C
392 397Right-handed alpha
Helix 54
AF9
D
58 71Right-handed alpha
Helix 55
AG1
D
101 106Right-handed alpha
Helix 56
AG2
D
108 112Right-handed 310
Helix 57
AG3
D
113 122Right-handed alpha
Helix 58
AG4
D
134 139Right-handed 310
Helix 59
AG5
D
154 164Right-handed alpha
Helix 60
AG6
D
186 190Right-handed 310
Helix 61
AG7
D
194 206Right-handed alpha
Helix 62
AG8
D
216 218Right-handed 310
Helix 63
AG9
D
219 235Right-handed alpha
Helix 64
AH1
D
251 261Right-handed alpha
Helix 65
AH2
D
263 269Right-handed alpha
Helix 66
AH3
D
313 324Right-handed alpha
Helix 67
AH4
D
331 343Right-handed alpha
Helix 68
AH5
D
365 370Right-handed 310
Helix 69
AH6
D
379 391Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8TIC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
175 184parallel
Strand 4
A
142 149parallel
Strand 5
A
240 245parallel
Strand 6
A
303 312anti-parallel
Strand 7
A
271 276anti-parallel
Strand 8
A
348 349parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
374 376anti-parallel
Strand 3
A
353 354parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
208 214anti-parallel
Strand 3
B
176 184parallel
Strand 4
B
144 149parallel
Strand 5
B
240 245parallel
Strand 6
B
308 312anti-parallel
Strand 7
B
271 273anti-parallel
Strand 8
B
348 349parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
374 376anti-parallel
Strand 3
B
353 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 132first strand
Strand 2
C
208 214anti-parallel
Strand 3
C
176 184parallel
Strand 4
C
144 149parallel
Strand 5
C
240 245parallel
Strand 6
C
303 312anti-parallel
Strand 7
C
271 276anti-parallel
Strand 8
C
348 349parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
248 250first strand
Strand 2
C
374 376anti-parallel
Strand 3
C
353 354parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 132first strand
Strand 2
D
208 214anti-parallel
Strand 3
D
176 184parallel
Strand 4
D
144 149parallel
Strand 5
D
240 245parallel
Strand 6
D
303 312anti-parallel
Strand 7
D
271 276anti-parallel
Strand 8
D
348 349parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
248 250first strand
Strand 2
D
374 376anti-parallel
Strand 3
D
353 354parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il