Analysis of interatomic Contacts of Structural Units in PDB entry:
8TIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TIN entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8TIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 4GLU 231
A
 THR 7PRO 349
L
 ASP 2ARG 212
R
 GLU 351GLU 351
R
 GLU 353TYR 354
R
 ALA 356LEU 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8TIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
204 208Right-handed 310
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
100 108Right-handed alpha
Helix 4
AA4
L
122 129Right-handed alpha
Helix 5
AA5
L
184 190Right-handed alpha
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There are 16 sheets in PDB entry 8TIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 10first strand
Strand 2
H
20 28anti-parallel
Strand 3
H
81 87anti-parallel
Strand 4
H
71 76anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 63first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
35 42anti-parallel
Strand 4
H
95 103anti-parallel
Strand 5
H
121 122anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 63first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
35 42anti-parallel
Strand 4
H
95 103anti-parallel
Strand 5
H
126 128anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
139 143first strand
Strand 2
H
155 164anti-parallel
Strand 3
H
195 203anti-parallel
Strand 4
H
183 189anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
172 173first strand
Strand 2
H
213 219anti-parallel
Strand 3
H
224 230anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 118first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
20 23anti-parallel
Strand 4
A
10 13anti-parallel
Strand 5
R
352 354anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
171 172parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 88first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
146 152anti-parallel
Strand 4
A
165 167anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
142 143anti-parallel
Strand 3
A
128 130anti-parallel
Strand 4
A
289 291anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
198 204anti-parallel
Strand 3
A
215 223anti-parallel
Strand 4
A
267 275anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 259first strand
Strand 2
A
232 242anti-parallel
Strand 3
A
318 328anti-parallel
Strand 4
A
337 341anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 8first strand
Strand 2
L
20 25anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 67anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
104 105parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 39first strand
Strand 2
L
86 91anti-parallel
Strand 3
L
98 99anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 162anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 150first strand
Strand 2
L
192 199anti-parallel
Strand 3
L
206 211anti-parallel
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