Analysis of interatomic Contacts of Structural Units in PDB entry:
8TIQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TIQ entry

There are 3 chains in PDB entry 8TIQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 C 2 A 33
B
 C 4 A 35
C
 ASN 14ILE 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8TIQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
22 26Right-handed alpha
Helix 2
AA2
C
32 48Right-handed alpha
Helix 3
AA3
C
64 71Right-handed alpha
Helix 4
AA4
C
74 88Right-handed alpha
Helix 5
AA5
C
135 140Right-handed alpha
Helix 6
AA6
C
152 154Right-handed 310
Helix 7
AA7
C
159 171Right-handed alpha
Helix 8
AA8
C
185 192Right-handed alpha
Helix 9
AA9
C
195 199Right-handed 310
Helix 10
AB1
C
200 208Right-handed alpha
Helix 11
AB2
C
208 220Right-handed alpha
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There are 4 sheets in PDB entry 8TIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
146 150anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
126 131anti-parallel
Strand 3
C
115 120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 96first strand
Strand 2
C
110 113anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 184first strand
Strand 2
C
234 244anti-parallel
Strand 3
C
222 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il