Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TJ3 entry

There are 2 chains in PDB entry 8TJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 9LYS 364
C
 THR 388LEU 990
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8TJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 15Right-handed alpha
Helix 2
AA2
B
17 39Right-handed alpha
Helix 3
AA3
B
42 64Right-handed alpha
Helix 4
AA4
B
67 91Right-handed alpha
Helix 5
AA5
B
112 130Right-handed alpha
Helix 6
AA6
B
140 157Right-handed alpha
Helix 7
AA7
B
160 178Right-handed alpha
Helix 8
AA8
B
180 201Right-handed alpha
Helix 9
AA9
B
204 216Right-handed alpha
Helix 10
AB1
B
223 237Right-handed alpha
Helix 11
AB2
B
263 296Right-handed alpha
Helix 12
AB3
B
300 327Right-handed alpha
Helix 13
AB4
B
342 363Right-handed alpha
Helix 14
AB5
C
389 421Right-handed alpha
Helix 15
AB6
C
423 427Right-handed 310
Helix 16
AB7
C
469 472Right-handed 310
Helix 17
AB8
C
474 487Right-handed alpha
Helix 18
AB9
C
489 503Right-handed alpha
Helix 19
AC1
C
516 526Right-handed alpha
Helix 20
AC2
C
545 549Right-handed 310
Helix 21
AC3
C
560 570Right-handed alpha
Helix 22
AC4
C
572 577Right-handed alpha
Helix 23
AC5
C
586 591Right-handed alpha
Helix 24
AC6
C
591 597Right-handed alpha
Helix 25
AC7
C
632 644Right-handed alpha
Helix 26
AC8
C
671 676Right-handed alpha
Helix 27
AC9
C
679 688Right-handed alpha
Helix 28
AD1
C
705 708Right-handed 310
Helix 29
AD2
C
709 720Right-handed alpha
Helix 30
AD3
C
780 789Right-handed alpha
Helix 31
AD4
C
838 851Right-handed alpha
Helix 32
AD5
C
887 901Right-handed alpha
Helix 33
AD6
C
907 911Right-handed 310
Helix 34
AD7
C
970 972Right-handed 310
Helix 35
AD8
C
976 990Right-handed alpha
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There are 6 sheets in PDB entry 8TJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
438 441first strand
Strand 2
C
600 603anti-parallel
Strand 3
C
617 619anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
509 512first strand
Strand 2
C
458 467anti-parallel
Strand 3
C
533 542anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
556 558first strand
Strand 2
C
581 583anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
606 607first strand
Strand 2
C
611 612anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
628 629first strand
Strand 2
C
861 863anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
662 665first strand
Strand 2
C
648 653anti-parallel
Strand 3
C
963 968anti-parallel
Strand 4
C
949 954anti-parallel
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