Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TJC entry

There are 4 chains in PDB entry 8TJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 56	CYS 397
B	GLU 46	CYS 397
C	GLU 56	CYS 397
D	GLU 56	CYS 397

There are 62 helices in PDB entry 8TJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	71	Right-handed alpha
Helix 2	AA2	A	101	106	Right-handed alpha
Helix 3	AA3	A	108	112	Right-handed 310
Helix 4	AA4	A	113	122	Right-handed alpha
Helix 5	AA5	A	154	164	Right-handed alpha
Helix 6	AA6	A	186	190	Right-handed 310
Helix 7	AA7	A	194	206	Right-handed alpha
Helix 8	AA8	A	216	218	Right-handed 310
Helix 9	AA9	A	219	235	Right-handed alpha
Helix 10	AB1	A	251	261	Right-handed alpha
Helix 11	AB2	A	313	324	Right-handed alpha
Helix 12	AB3	A	331	344	Right-handed alpha
Helix 13	AB4	A	359	363	Right-handed 310
Helix 14	AB5	A	366	371	Right-handed alpha
Helix 15	AB6	A	379	391	Right-handed alpha
Helix 16	AB7	A	392	397	Right-handed alpha
Helix 17	AB8	B	57	71	Right-handed alpha
Helix 18	AB9	B	101	106	Right-handed alpha
Helix 19	AC1	B	108	112	Right-handed 310
Helix 20	AC2	B	113	122	Right-handed alpha
Helix 21	AC3	B	154	164	Right-handed alpha
Helix 22	AC4	B	186	190	Right-handed 310
Helix 23	AC5	B	194	206	Right-handed alpha
Helix 24	AC6	B	216	218	Right-handed 310
Helix 25	AC7	B	219	235	Right-handed alpha
Helix 26	AC8	B	251	260	Right-handed alpha
Helix 27	AC9	B	263	269	Right-handed alpha
Helix 28	AD1	B	313	324	Right-handed alpha
Helix 29	AD2	B	331	343	Right-handed alpha
Helix 30	AD3	B	366	371	Right-handed alpha
Helix 31	AD4	B	379	392	Right-handed alpha
Helix 32	AD5	C	57	70	Right-handed alpha
Helix 33	AD6	C	100	106	Right-handed alpha
Helix 34	AD7	C	108	112	Right-handed 310
Helix 35	AD8	C	113	122	Right-handed alpha
Helix 36	AD9	C	154	164	Right-handed alpha
Helix 37	AE1	C	186	190	Right-handed 310
Helix 38	AE2	C	194	206	Right-handed alpha
Helix 39	AE3	C	216	218	Right-handed 310
Helix 40	AE4	C	219	235	Right-handed alpha
Helix 41	AE5	C	251	261	Right-handed alpha
Helix 42	AE6	C	313	323	Right-handed alpha
Helix 43	AE7	C	324	326	Right-handed 310
Helix 44	AE8	C	331	343	Right-handed alpha
Helix 45	AE9	C	365	370	Right-handed 310
Helix 46	AF1	C	379	392	Right-handed alpha
Helix 47	AF2	D	57	70	Right-handed alpha
Helix 48	AF3	D	101	106	Right-handed alpha
Helix 49	AF4	D	108	112	Right-handed 310
Helix 50	AF5	D	113	122	Right-handed alpha
Helix 51	AF6	D	154	164	Right-handed alpha
Helix 52	AF7	D	186	190	Right-handed 310
Helix 53	AF8	D	194	206	Right-handed alpha
Helix 54	AF9	D	216	218	Right-handed 310
Helix 55	AG1	D	219	235	Right-handed alpha
Helix 56	AG2	D	251	261	Right-handed alpha
Helix 57	AG3	D	263	269	Right-handed alpha
Helix 58	AG4	D	313	324	Right-handed alpha
Helix 59	AG5	D	331	343	Right-handed alpha
Helix 60	AG6	D	366	371	Right-handed alpha
Helix 61	AG7	D	379	391	Right-handed alpha
Helix 62	AG8	D	392	396	Right-handed 310

There are 13 sheets in PDB entry 8TJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	208	214	anti-parallel
Strand 3	A	174	184	parallel
Strand 4	A	169	171	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	208	214	anti-parallel
Strand 3	A	174	184	parallel
Strand 4	A	144	149	parallel
Strand 5	A	240	245	parallel
Strand 6	A	308	312	anti-parallel
Strand 7	A	271	273	anti-parallel
Strand 8	A	348	349	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	374	376	anti-parallel
Strand 3	A	353	354	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	303	304	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	208	214	anti-parallel
Strand 3	B	174	184	parallel
Strand 4	B	170	171	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	208	214	anti-parallel
Strand 3	B	174	184	parallel
Strand 4	B	144	149	parallel
Strand 5	B	240	245	parallel
Strand 6	B	303	312	anti-parallel
Strand 7	B	271	276	anti-parallel
Strand 8	B	348	349	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	374	376	anti-parallel
Strand 3	B	353	354	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	208	214	anti-parallel
Strand 3	C	175	184	parallel
Strand 4	C	169	170	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	208	214	anti-parallel
Strand 3	C	175	184	parallel
Strand 4	C	144	149	parallel
Strand 5	C	240	245	parallel
Strand 6	C	303	312	anti-parallel
Strand 7	C	271	276	anti-parallel
Strand 8	C	348	349	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	250	first strand
Strand 2	C	374	376	anti-parallel
Strand 3	C	353	354	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	208	214	anti-parallel
Strand 3	D	176	184	parallel
Strand 4	D	144	149	parallel
Strand 5	D	240	245	parallel
Strand 6	D	308	312	anti-parallel
Strand 7	D	271	273	anti-parallel
Strand 8	D	348	349	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	250	first strand
Strand 2	D	374	376	anti-parallel
Strand 3	D	353	354	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJC