Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TJE entry

There are 4 chains in PDB entry 8TJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 165PRO 593
B
 C 801 G 802
C
 C 821 A 829
D
 T 836 A 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8TJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 228Right-handed 310
Helix 2
AA2
A
230 238Right-handed alpha
Helix 3
AA3
A
284 288Right-handed 310
Helix 4
AA4
A
315 329Right-handed alpha
Helix 5
AA5
A
334 339Right-handed 310
Helix 6
AA6
A
342 347Right-handed alpha
Helix 7
AA7
A
377 382Right-handed 310
Helix 8
AA8
A
415 419Right-handed 310
Helix 9
AA9
A
420 425Right-handed 310
Helix 10
AB1
A
467 473Right-handed alpha
Helix 11
AB2
A
556 559Right-handed 310
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There are 9 sheets in PDB entry 8TJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
528 544anti-parallel
Strand 3
A
177 192anti-parallel
Strand 4
A
349 352parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
528 544anti-parallel
Strand 3
A
244 254anti-parallel
Strand 4
A
393 401anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
210 220anti-parallel
Strand 3
A
355 361anti-parallel
Strand 4
A
294 296anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
210 220anti-parallel
Strand 3
A
503 507anti-parallel
Strand 4
A
278 282anti-parallel
Strand 5
A
383 386anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
308 311anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 440first strand
Strand 2
A
450 452anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
561 564anti-parallel
Strand 3
A
487 489anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
525 526anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 575first strand
Strand 2
A
586 589anti-parallel
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