Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TJI entry

There are 2 chains in PDB entry 8TJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12LYS 344
B
 PRO 12LYS 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8TJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
37 42Right-handed alpha
Helix 4
AA4
A
49 57Right-handed alpha
Helix 5
AA5
A
62 73Right-handed alpha
Helix 6
AA6
A
86 93Right-handed alpha
Helix 7
AA7
A
102 111Right-handed alpha
Helix 8
AA8
A
111 117Right-handed alpha
Helix 9
AA9
A
118 126Right-handed alpha
Helix 10
AB1
A
157 160Right-handed 310
Helix 11
AB2
A
161 172Right-handed alpha
Helix 12
AB3
A
173 177Right-handed 310
Helix 13
AB4
A
188 198Right-handed alpha
Helix 14
AB5
A
208 210Right-handed 310
Helix 15
AB6
A
211 223Right-handed alpha
Helix 16
AB7
A
224 226Right-handed 310
Helix 17
AB8
A
251 255Right-handed 310
Helix 18
AB9
A
256 271Right-handed alpha
Helix 19
AC1
A
291 305Right-handed alpha
Helix 20
AC2
A
312 323Right-handed alpha
Helix 21
AC3
B
13 22Right-handed alpha
Helix 22
AC4
B
23 37Right-handed alpha
Helix 23
AC5
B
37 42Right-handed alpha
Helix 24
AC6
B
49 57Right-handed alpha
Helix 25
AC7
B
62 73Right-handed alpha
Helix 26
AC8
B
86 93Right-handed alpha
Helix 27
AC9
B
101 111Right-handed alpha
Helix 28
AD1
B
111 117Right-handed alpha
Helix 29
AD2
B
118 126Right-handed alpha
Helix 30
AD3
B
130 135Right-handed alpha
Helix 31
AD4
B
147 172Right-handed alpha
Helix 32
AD5
B
173 177Right-handed 310
Helix 33
AD6
B
188 198Right-handed alpha
Helix 34
AD7
B
208 210Right-handed 310
Helix 35
AD8
B
211 223Right-handed alpha
Helix 36
AD9
B
224 226Right-handed 310
Helix 37
AE1
B
251 255Right-handed 310
Helix 38
AE2
B
256 271Right-handed alpha
Helix 39
AE3
B
291 305Right-handed alpha
Helix 40
AE4
B
312 323Right-handed alpha
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There are 4 sheets in PDB entry 8TJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
76 79anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
202 207parallel
Strand 3
A
179 183parallel
Strand 4
A
245 249parallel
Strand 5
A
276 281parallel
Strand 6
A
337 343anti-parallel
Strand 7
A
327 334anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
82 85anti-parallel
Strand 3
B
76 79anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
202 207parallel
Strand 3
B
179 183parallel
Strand 4
B
245 249parallel
Strand 5
B
276 281parallel
Strand 6
B
337 343anti-parallel
Strand 7
B
327 334anti-parallel
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