Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TJN entry

There are 7 chains in PDB entry 8TJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	ASP 1448
B	LEU 1450	GLY 1490
A	ALA 2	ARG 1390
C	GLU 3	PRO 220
D	ASP 17	PHE 231
E	GLU 3	PRO 220
F	ASP 17	PHE 231

There are 88 helices in PDB entry 8TJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	33	Right-handed alpha
Helix 2	AA2	B	50	61	Right-handed alpha
Helix 3	AA3	B	112	117	Right-handed alpha
Helix 4	AA4	B	120	138	Right-handed alpha
Helix 5	AA5	B	140	144	Right-handed 310
Helix 6	AA6	B	174	179	Right-handed alpha
Helix 7	AA7	B	182	193	Right-handed alpha
Helix 8	AA8	B	203	205	Right-handed 310
Helix 9	AA9	B	206	221	Right-handed alpha
Helix 10	AB1	B	238	245	Right-handed alpha
Helix 11	AB2	B	280	287	Right-handed alpha
Helix 12	AB3	B	312	327	Right-handed alpha
Helix 13	AB4	B	330	334	Right-handed 310
Helix 14	AB5	B	346	359	Right-handed alpha
Helix 15	AB6	B	360	363	Right-handed 310
Helix 16	AB7	B	372	377	Right-handed alpha
Helix 17	AB8	B	379	383	Right-handed 310
Helix 18	AB9	B	384	398	Right-handed alpha
Helix 19	AC1	B	481	499	Right-handed alpha
Helix 20	AC2	B	503	513	Right-handed alpha
Helix 21	AC3	B	530	542	Right-handed alpha
Helix 22	AC4	B	570	574	Right-handed 310
Helix 23	AC5	B	580	586	Right-handed alpha
Helix 24	AC6	B	587	599	Right-handed alpha
Helix 25	AC7	B	601	610	Right-handed alpha
Helix 26	AC8	B	624	645	Right-handed alpha
Helix 27	AC9	B	657	667	Right-handed alpha
Helix 28	AD1	B	672	679	Right-handed alpha
Helix 29	AD2	B	813	824	Right-handed alpha
Helix 30	AD3	B	837	848	Right-handed alpha
Helix 31	AD4	B	864	878	Right-handed alpha
Helix 32	AD5	B	883	888	Right-handed alpha
Helix 33	AD6	B	1410	1428	Right-handed alpha
Helix 34	AD7	B	1448	1464	Right-handed alpha
Helix 35	AD8	B	1470	1475	Right-handed alpha
Helix 36	AD9	B	1477	1487	Right-handed alpha
Helix 37	AE1	A	8	33	Right-handed alpha
Helix 38	AE2	A	50	61	Right-handed alpha
Helix 39	AE3	A	112	119	Right-handed alpha
Helix 40	AE4	A	120	136	Right-handed alpha
Helix 41	AE5	A	163	167	Right-handed 310
Helix 42	AE6	A	182	192	Right-handed alpha
Helix 43	AE7	A	203	205	Right-handed 310
Helix 44	AE8	A	206	222	Right-handed alpha
Helix 45	AE9	A	239	247	Right-handed alpha
Helix 46	AF1	A	280	287	Right-handed alpha
Helix 47	AF2	A	312	328	Right-handed alpha
Helix 48	AF3	A	330	334	Right-handed 310
Helix 49	AF4	A	346	359	Right-handed alpha
Helix 50	AF5	A	371	375	Right-handed 310
Helix 51	AF6	A	379	383	Right-handed 310
Helix 52	AF7	A	384	398	Right-handed alpha
Helix 53	AF8	A	481	499	Right-handed alpha
Helix 54	AF9	A	503	513	Right-handed alpha
Helix 55	AG1	A	528	541	Right-handed alpha
Helix 56	AG2	A	575	580	Right-handed alpha
Helix 57	AG3	A	580	595	Right-handed alpha
Helix 58	AG4	A	601	608	Right-handed alpha
Helix 59	AG5	A	626	645	Right-handed alpha
Helix 60	AG6	A	658	666	Right-handed alpha
Helix 61	AG7	A	670	683	Right-handed alpha
Helix 62	AG8	A	812	824	Right-handed alpha
Helix 63	AG9	A	836	847	Right-handed alpha
Helix 64	AH1	A	864	879	Right-handed alpha
Helix 65	AH2	A	922	928	Right-handed alpha
Helix 66	AH3	A	959	972	Right-handed alpha
Helix 67	AH4	A	988	995	Right-handed alpha
Helix 68	AH5	A	1021	1037	Right-handed alpha
Helix 69	AH6	A	1062	1078	Right-handed alpha
Helix 70	AH7	A	1093	1100	Right-handed alpha
Helix 71	AH8	A	1100	1105	Right-handed alpha
Helix 72	AH9	A	1151	1164	Right-handed alpha
Helix 73	AI1	A	1174	1178	Right-handed 310
Helix 74	AI2	A	1182	1192	Right-handed alpha
Helix 75	AI3	A	1204	1214	Right-handed alpha
Helix 76	AI4	A	1240	1248	Right-handed alpha
Helix 77	AI5	A	1248	1262	Right-handed alpha
Helix 78	AI6	A	1287	1305	Right-handed alpha
Helix 79	AI7	A	1325	1333	Right-handed alpha
Helix 80	AI8	A	1340	1354	Right-handed alpha
Helix 81	AI9	A	1365	1374	Right-handed alpha
Helix 82	AJ1	A	1385	1390	Right-handed 310
Helix 83	AJ2	C	55	59	Right-handed 310
Helix 84	AJ3	C	91	95	Right-handed 310
Helix 85	AJ4	C	161	165	Right-handed 310
Helix 86	AJ5	D	100	104	Right-handed 310
Helix 87	AJ6	D	189	193	Right-handed 310
Helix 88	AJ7	E	91	95	Right-handed 310

There are 29 sheets in PDB entry 8TJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	422	first strand
Strand 2	B	367	370	parallel
Strand 3	B	336	338	parallel
Strand 4	B	437	443	parallel
Strand 5	B	448	456	anti-parallel
Strand 6	B	292	301	anti-parallel
Strand 7	B	35	43	anti-parallel
Strand 8	B	271	279	anti-parallel
Strand 9	B	226	233	anti-parallel
Strand 10	B	149	154	parallel
Strand 11	B	198	202	parallel
Strand 12	A	198	202	anti-parallel
Strand 13	A	150	154	parallel
Strand 14	A	227	233	parallel
Strand 15	A	271	279	anti-parallel
Strand 16	A	35	43	anti-parallel
Strand 17	A	292	301	anti-parallel
Strand 18	A	448	456	anti-parallel
Strand 19	A	437	443	anti-parallel
Strand 20	A	336	338	parallel
Strand 21	A	367	370	parallel
Strand 22	A	420	422	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	906	907	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	427	428	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	521	524	anti-parallel
Strand 3	B	548	550	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	654	first strand
Strand 2	B	558	562	parallel
Strand 3	B	827	830	parallel
Strand 4	B	853	856	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	786	first strand
Strand 2	B	791	793	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	520	521	anti-parallel
Strand 3	A	550	551	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	827	830	parallel
Strand 3	A	853	855	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1127	first strand
Strand 2	A	929	937	anti-parallel
Strand 3	A	1360	1361	anti-parallel
Strand 4	A	1313	1314	parallel
Strand 5	A	1274	1275	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	974	977	first strand
Strand 2	A	947	950	parallel
Strand 3	A	1000	1005	parallel
Strand 4	A	1043	1045	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1169	1170	first strand
Strand 2	A	1142	1145	parallel
Strand 3	A	1221	1225	parallel
Strand 4	A	1269	1271	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	82	88	anti-parallel
Strand 3	C	73	77	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	36	41	anti-parallel
Strand 4	C	96	102	anti-parallel
Strand 5	C	113	116	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	205	206	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	124	128	parallel
Strand 3	D	106	111	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	66	70	anti-parallel
Strand 6	D	74	75	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	40	first strand
Strand 2	D	91	96	anti-parallel
Strand 3	D	83	87	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	156	158	anti-parallel
Strand 3	D	197	201	anti-parallel
Strand 4	D	181	185	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	216	219	anti-parallel
Strand 3	D	227	228	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	19	27	anti-parallel
Strand 3	E	82	88	anti-parallel
Strand 4	E	74	76	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	117	118	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	52	first strand
Strand 2	E	36	41	anti-parallel
Strand 3	E	97	102	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	152	first strand
Strand 2	E	183	185	anti-parallel
Strand 3	E	176	177	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	202	206	anti-parallel
Strand 3	E	213	217	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	29	first strand
Strand 2	F	127	128	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	91	96	anti-parallel
Strand 3	F	83	86	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	69	first strand
Strand 2	F	54	59	anti-parallel
Strand 3	F	106	111	anti-parallel
Strand 4	F	124	125	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	140	first strand
Strand 2	F	155	157	anti-parallel
Strand 3	F	197	201	anti-parallel
Strand 4	F	181	185	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	168	first strand
Strand 2	F	218	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJN