Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TJO entry

There are 7 chains in PDB entry 8TJO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASP 1448
A	LEU 1450	GLY 1490
B	ALA 2	PRO 912
C	GLU 3	PRO 220
D	ASP 17	PHE 231
E	GLU 3	PRO 220
F	ASP 17	PHE 231

There are 91 helices in PDB entry 8TJO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	33	Right-handed alpha
Helix 2	AA2	A	50	61	Right-handed alpha
Helix 3	AA3	A	76	80	Right-handed 310
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	112	118	Right-handed alpha
Helix 6	AA6	A	120	137	Right-handed alpha
Helix 7	AA7	A	163	167	Right-handed 310
Helix 8	AA8	A	181	193	Right-handed alpha
Helix 9	AA9	A	203	205	Right-handed 310
Helix 10	AB1	A	206	221	Right-handed alpha
Helix 11	AB2	A	239	247	Right-handed alpha
Helix 12	AB3	A	280	287	Right-handed alpha
Helix 13	AB4	A	312	327	Right-handed alpha
Helix 14	AB5	A	347	360	Right-handed alpha
Helix 15	AB6	A	372	377	Right-handed alpha
Helix 16	AB7	A	379	383	Right-handed 310
Helix 17	AB8	A	384	398	Right-handed alpha
Helix 18	AB9	A	481	497	Right-handed alpha
Helix 19	AC1	A	503	514	Right-handed alpha
Helix 20	AC2	A	528	540	Right-handed alpha
Helix 21	AC3	A	575	580	Right-handed alpha
Helix 22	AC4	A	580	595	Right-handed alpha
Helix 23	AC5	A	596	598	Right-handed 310
Helix 24	AC6	A	601	607	Right-handed alpha
Helix 25	AC7	A	623	645	Right-handed alpha
Helix 26	AC8	A	657	666	Right-handed alpha
Helix 27	AC9	A	670	685	Right-handed alpha
Helix 28	AD1	A	812	823	Right-handed alpha
Helix 29	AD2	A	837	847	Right-handed alpha
Helix 30	AD3	A	864	879	Right-handed alpha
Helix 31	AD4	A	883	887	Right-handed 310
Helix 32	AD5	A	922	928	Right-handed alpha
Helix 33	AD6	A	959	972	Right-handed alpha
Helix 34	AD7	A	988	995	Right-handed alpha
Helix 35	AD8	A	1006	1009	Right-handed 310
Helix 36	AD9	A	1021	1037	Right-handed alpha
Helix 37	AE1	A	1064	1078	Right-handed alpha
Helix 38	AE2	A	1092	1098	Right-handed 310
Helix 39	AE3	A	1100	1105	Right-handed alpha
Helix 40	AE4	A	1151	1164	Right-handed alpha
Helix 41	AE5	A	1174	1178	Right-handed 310
Helix 42	AE6	A	1180	1192	Right-handed alpha
Helix 43	AE7	A	1204	1214	Right-handed alpha
Helix 44	AE8	A	1240	1249	Right-handed alpha
Helix 45	AE9	A	1250	1262	Right-handed alpha
Helix 46	AF1	A	1275	1279	Right-handed 310
Helix 47	AF2	A	1285	1287	Right-handed 310
Helix 48	AF3	A	1288	1303	Right-handed alpha
Helix 49	AF4	A	1325	1333	Right-handed alpha
Helix 50	AF5	A	1340	1355	Right-handed alpha
Helix 51	AF6	A	1365	1375	Right-handed alpha
Helix 52	AF7	A	1385	1390	Right-handed alpha
Helix 53	AF8	A	1410	1429	Right-handed alpha
Helix 54	AF9	A	1441	1446	Right-handed alpha
Helix 55	AG1	A	1448	1464	Right-handed alpha
Helix 56	AG2	A	1470	1475	Right-handed alpha
Helix 57	AG3	A	1477	1489	Right-handed alpha
Helix 58	AG4	B	7	33	Right-handed alpha
Helix 59	AG5	B	50	61	Right-handed alpha
Helix 60	AG6	B	112	118	Right-handed alpha
Helix 61	AG7	B	120	138	Right-handed alpha
Helix 62	AG8	B	174	179	Right-handed alpha
Helix 63	AG9	B	180	193	Right-handed alpha
Helix 64	AH1	B	203	205	Right-handed 310
Helix 65	AH2	B	206	222	Right-handed alpha
Helix 66	AH3	B	238	245	Right-handed alpha
Helix 67	AH4	B	246	248	Right-handed 310
Helix 68	AH5	B	280	286	Right-handed alpha
Helix 69	AH6	B	313	328	Right-handed alpha
Helix 70	AH7	B	330	334	Right-handed 310
Helix 71	AH8	B	346	360	Right-handed alpha
Helix 72	AH9	B	361	363	Right-handed 310
Helix 73	AI1	B	372	377	Right-handed alpha
Helix 74	AI2	B	379	383	Right-handed 310
Helix 75	AI3	B	384	398	Right-handed alpha
Helix 76	AI4	B	481	499	Right-handed alpha
Helix 77	AI5	B	503	512	Right-handed alpha
Helix 78	AI6	B	528	542	Right-handed alpha
Helix 79	AI7	B	573	580	Right-handed alpha
Helix 80	AI8	B	580	595	Right-handed alpha
Helix 81	AI9	B	626	645	Right-handed alpha
Helix 82	AJ1	B	656	667	Right-handed alpha
Helix 83	AJ2	B	670	686	Right-handed alpha
Helix 84	AJ3	B	814	824	Right-handed alpha
Helix 85	AJ4	B	837	846	Right-handed alpha
Helix 86	AJ5	B	864	878	Right-handed alpha
Helix 87	AJ6	B	883	889	Right-handed alpha
Helix 88	AJ7	C	91	95	Right-handed 310
Helix 89	AJ8	D	144	150	Right-handed 310
Helix 90	AJ9	E	91	95	Right-handed 310
Helix 91	AK1	E	163	165	Right-handed 310

There are 30 sheets in PDB entry 8TJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	367	370	parallel
Strand 3	A	336	338	parallel
Strand 4	A	437	443	parallel
Strand 5	A	448	456	anti-parallel
Strand 6	A	292	301	anti-parallel
Strand 7	A	35	43	anti-parallel
Strand 8	A	271	279	anti-parallel
Strand 9	A	226	233	anti-parallel
Strand 10	A	149	154	parallel
Strand 11	A	198	202	parallel
Strand 12	B	198	201	anti-parallel
Strand 13	B	150	154	parallel
Strand 14	B	227	233	parallel
Strand 15	B	271	279	anti-parallel
Strand 16	B	35	43	anti-parallel
Strand 17	B	292	301	anti-parallel
Strand 18	B	448	456	anti-parallel
Strand 19	B	437	443	anti-parallel
Strand 20	B	336	338	parallel
Strand 21	B	367	370	parallel
Strand 22	B	420	422	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	479	first strand
Strand 2	A	520	521	anti-parallel
Strand 3	A	550	551	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	654	first strand
Strand 2	A	558	562	parallel
Strand 3	A	828	830	parallel
Strand 4	A	854	855	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	785	first strand
Strand 2	A	792	793	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	930	934	first strand
Strand 2	A	1123	1127	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	979	first strand
Strand 2	A	950	952	parallel
Strand 3	A	1003	1005	parallel
Strand 4	A	1043	1045	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1169	1170	first strand
Strand 2	A	1196	1197	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1225	first strand
Strand 2	A	1270	1271	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	906	907	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	427	428	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	520	524	anti-parallel
Strand 3	B	548	550	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	827	830	parallel
Strand 3	B	853	855	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	785	first strand
Strand 2	B	792	793	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	23	25	anti-parallel
Strand 3	C	82	84	anti-parallel
Strand 4	C	75	77	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	114	117	parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	47	52	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	186	187	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	212	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	36	40	anti-parallel
Strand 3	D	92	95	anti-parallel
Strand 4	D	84	86	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	127	128	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	106	111	anti-parallel
Strand 4	D	124	125	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	21	25	anti-parallel
Strand 3	E	82	86	anti-parallel
Strand 4	E	73	77	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	117	118	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	47	53	anti-parallel
Strand 3	E	37	41	anti-parallel
Strand 4	E	97	100	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	147	152	anti-parallel
Strand 3	E	183	185	anti-parallel
Strand 4	E	176	177	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	161	first strand
Strand 2	E	202	207	anti-parallel
Strand 3	E	214	217	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	29	first strand
Strand 2	F	124	128	parallel
Strand 3	F	106	111	anti-parallel
Strand 4	F	54	59	anti-parallel
Strand 5	F	65	70	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	40	first strand
Strand 2	F	91	96	anti-parallel
Strand 3	F	83	86	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	155	first strand
Strand 2	F	197	203	anti-parallel
Strand 3	F	182	185	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	170	first strand
Strand 2	F	216	219	anti-parallel
Strand 3	F	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TJO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJO