Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TJR entry

There are 6 chains in PDB entry 8TJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	GLU 1	SER 114
K	ASP 1	LYS 112
A	GLU 32	VAL 514
D	PHE 519	ASP 664
B	GLU 32	VAL 514
E	ALA 512	MET 535

There are 39 helices in PDB entry 8TJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	28	32	Right-handed 310
Helix 2	AA2	J	89	93	Right-handed 310
Helix 3	AA3	A	98	115	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	344	363	Right-handed alpha
Helix 6	AA6	A	377	382	Right-handed alpha
Helix 7	AA7	A	484	490	Right-handed alpha
Helix 8	AA8	D	523	527	Right-handed 310
Helix 9	AA9	D	529	534	Right-handed alpha
Helix 10	AB1	D	536	543	Right-handed alpha
Helix 11	AB2	D	573	596	Right-handed alpha
Helix 12	AB3	D	618	622	Right-handed 310
Helix 13	AB4	D	627	635	Right-handed alpha
Helix 14	AB5	D	653	660	Right-handed alpha
Helix 15	AB6	B	94	98	Right-handed 310
Helix 16	AB7	B	99	114	Right-handed alpha
Helix 17	AB8	B	122	126	Right-handed 310
Helix 18	AB9	B	344	353	Right-handed alpha
Helix 19	AC1	B	353	358	Right-handed alpha
Helix 20	AC2	B	358	363	Right-handed alpha
Helix 21	AC3	B	484	489	Right-handed alpha
Helix 22	AC4	E	529	534	Right-handed alpha
Helix 23	AC5	E	536	542	Right-handed alpha
Helix 24	AC6	E	543	546	Right-handed 310
Helix 25	AC7	E	573	595	Right-handed alpha
Helix 26	AC8	E	627	632	Right-handed alpha
Helix 27	AC9	E	638	643	Right-handed alpha
Helix 28	AD1	E	650	655	Right-handed alpha
Helix 29	AD2	E	657	662	Right-handed alpha
Helix 30	AD3	H	28	32	Right-handed 310
Helix 31	AD4	C	98	115	Right-handed alpha
Helix 32	AD5	C	122	126	Right-handed 310
Helix 33	AD6	C	344	362	Right-handed alpha
Helix 34	AD7	C	483	487	Right-handed 310
Helix 35	AD8	F	529	534	Right-handed alpha
Helix 36	AD9	F	536	543	Right-handed alpha
Helix 37	AE1	F	571	596	Right-handed alpha
Helix 38	AE2	F	627	635	Right-handed alpha
Helix 39	AE3	F	651	664	Right-handed alpha

There are 35 sheets in PDB entry 8TJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	80	86	anti-parallel
Strand 4	J	74	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	108	112	parallel
Strand 3	J	94	100	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	60	62	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	6	first strand
Strand 2	K	22	24	anti-parallel
Strand 3	K	75	77	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	110	parallel
Strand 3	K	90	95	anti-parallel
Strand 4	K	38	43	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	67	68	first strand
Strand 2	K	79	80	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	508	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	D	603	609	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	495	500	anti-parallel
Strand 3	A	232	237	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	217	218	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	245	248	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	198	202	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	453	465	anti-parallel
Strand 3	A	301	306	anti-parallel
Strand 4	A	339	343	anti-parallel
Strand 5	A	422	429	anti-parallel
Strand 6	A	390	394	anti-parallel
Strand 7	A	383	387	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	293	296	anti-parallel
Strand 3	A	453	465	anti-parallel
Strand 4	A	475	479	anti-parallel
Strand 5	A	368	370	parallel
Strand 6	A	402	404	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	321	first strand
Strand 2	A	324	329	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	443	444	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	508	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	E	603	609	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	495	500	anti-parallel
Strand 3	B	232	237	anti-parallel
Strand 4	B	251	254	anti-parallel
Strand 5	B	83	86	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	93	first strand
Strand 2	B	246	248	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	177	first strand
Strand 2	B	154	162	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	198	202	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	450	465	anti-parallel
Strand 3	B	293	311	anti-parallel
Strand 4	B	339	343	anti-parallel
Strand 5	B	422	430	anti-parallel
Strand 6	B	390	394	anti-parallel
Strand 7	B	383	387	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	293	311	anti-parallel
Strand 3	B	450	465	anti-parallel
Strand 4	B	474	479	anti-parallel
Strand 5	B	367	370	parallel
Strand 6	B	403	404	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	321	first strand
Strand 2	B	324	329	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	443	444	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	80	86	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	108	112	parallel
Strand 3	H	94	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	76	80	anti-parallel
Strand 4	L	67	71	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	108	111	parallel
Strand 3	L	89	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	508	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	495	500	anti-parallel
Strand 3	C	232	237	anti-parallel
Strand 4	C	251	254	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	245	248	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	181	183	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	172	177	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	443	444	parallel
Strand 3	C	432	433	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	450	465	anti-parallel
Strand 3	C	301	311	anti-parallel
Strand 4	C	338	343	anti-parallel
Strand 5	C	422	430	anti-parallel
Strand 6	C	390	394	anti-parallel
Strand 7	C	383	387	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	282	first strand
Strand 2	C	293	296	anti-parallel
Strand 3	C	450	465	anti-parallel
Strand 4	C	475	479	anti-parallel
Strand 5	C	368	370	parallel
Strand 6	C	402	404	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	321	first strand
Strand 2	C	324	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJR