Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TJT entry

There are 7 chains in PDB entry 8TJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLU 213
B	ASP 1	GLU 213
C	ASP 1	GLU 213
D	GLU 215	SER 441
E	GLU 215	SER 441
F	GLU 215	LYS 440
H	GLU 215	PRO 255

There are 19 helices in PDB entry 8TJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	121	126	Right-handed alpha
Helix 3	AA3	A	183	187	Right-handed alpha
Helix 4	AA4	B	79	83	Right-handed 310
Helix 5	AA5	B	121	127	Right-handed alpha
Helix 6	AA6	B	183	188	Right-handed alpha
Helix 7	AA7	C	79	83	Right-handed 310
Helix 8	AA8	C	121	126	Right-handed alpha
Helix 9	AA9	C	183	188	Right-handed alpha
Helix 10	AB1	D	301	305	Right-handed 310
Helix 11	AB2	D	413	416	Right-handed 310
Helix 12	AB3	E	301	305	Right-handed 310
Helix 13	AB4	F	301	305	Right-handed 310
Helix 14	AB5	F	413	416	Right-handed 310
Helix 15	AB6	H	301	305	Right-handed 310
Helix 16	AB7	H	413	417	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	121	126	Right-handed alpha
Helix 19	AC1	L	183	187	Right-handed alpha

There are 40 sheets in PDB entry 8TJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	102	106	parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	34	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	102	106	parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	95	98	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	67	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	18	24	anti-parallel
Strand 4	B	153	156	parallel
Strand 5	B	145	150	anti-parallel
Strand 6	B	191	197	anti-parallel
Strand 7	B	205	210	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	173	182	anti-parallel
Strand 4	A	159	160	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	210	first strand
Strand 2	A	191	197	anti-parallel
Strand 3	A	145	150	anti-parallel
Strand 4	A	153	156	anti-parallel
Strand 5	B	18	22	parallel
Strand 6	B	70	75	anti-parallel
Strand 7	B	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	34	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	96	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	160	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	34	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	85	91	anti-parallel
Strand 4	C	96	98	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	67	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	18	24	anti-parallel
Strand 4	L	153	156	parallel
Strand 5	L	145	150	anti-parallel
Strand 6	L	191	197	anti-parallel
Strand 7	L	205	210	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	173	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	191	198	anti-parallel
Strand 3	C	144	150	anti-parallel
Strand 4	C	153	156	anti-parallel
Strand 5	L	18	24	parallel
Strand 6	L	70	75	anti-parallel
Strand 7	L	62	67	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	221	first strand
Strand 2	D	232	239	anti-parallel
Strand 3	D	292	297	anti-parallel
Strand 4	D	282	287	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	333	337	parallel
Strand 3	D	306	313	anti-parallel
Strand 4	D	247	253	anti-parallel
Strand 5	D	259	265	anti-parallel
Strand 6	D	272	274	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	333	337	parallel
Strand 3	D	306	313	anti-parallel
Strand 4	D	326	329	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	361	371	anti-parallel
Strand 3	D	402	411	anti-parallel
Strand 4	D	390	391	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	361	371	anti-parallel
Strand 3	D	402	411	anti-parallel
Strand 4	D	395	396	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	380	first strand
Strand 2	D	421	426	anti-parallel
Strand 3	D	431	436	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	221	first strand
Strand 2	E	232	239	anti-parallel
Strand 3	E	292	297	anti-parallel
Strand 4	E	282	287	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	226	first strand
Strand 2	E	333	337	parallel
Strand 3	E	306	313	anti-parallel
Strand 4	E	247	253	anti-parallel
Strand 5	E	259	266	anti-parallel
Strand 6	E	271	274	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	226	first strand
Strand 2	E	333	337	parallel
Strand 3	E	306	313	anti-parallel
Strand 4	E	326	329	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	362	371	anti-parallel
Strand 3	E	402	410	anti-parallel
Strand 4	E	389	391	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	362	371	anti-parallel
Strand 3	E	402	410	anti-parallel
Strand 4	E	395	396	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	380	first strand
Strand 2	E	420	426	anti-parallel
Strand 3	E	431	437	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	221	first strand
Strand 2	F	232	239	anti-parallel
Strand 3	F	292	297	anti-parallel
Strand 4	F	282	287	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	226	first strand
Strand 2	F	333	337	parallel
Strand 3	F	306	313	anti-parallel
Strand 4	F	247	253	anti-parallel
Strand 5	F	259	265	anti-parallel
Strand 6	F	272	274	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	226	first strand
Strand 2	F	333	337	parallel
Strand 3	F	306	313	anti-parallel
Strand 4	F	326	329	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	350	first strand
Strand 2	F	361	371	anti-parallel
Strand 3	F	402	411	anti-parallel
Strand 4	F	389	391	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	350	first strand
Strand 2	F	361	371	anti-parallel
Strand 3	F	402	411	anti-parallel
Strand 4	F	395	396	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	377	380	first strand
Strand 2	F	421	426	anti-parallel
Strand 3	F	431	436	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	217	221	first strand
Strand 2	H	232	239	anti-parallel
Strand 3	H	292	297	anti-parallel
Strand 4	H	282	287	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	226	first strand
Strand 2	H	333	337	parallel
Strand 3	H	306	313	anti-parallel
Strand 4	H	247	253	anti-parallel
Strand 5	H	259	266	anti-parallel
Strand 6	H	271	274	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	225	226	first strand
Strand 2	H	333	337	parallel
Strand 3	H	306	313	anti-parallel
Strand 4	H	326	329	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	350	first strand
Strand 2	H	361	371	anti-parallel
Strand 3	H	402	411	anti-parallel
Strand 4	H	389	391	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	350	first strand
Strand 2	H	361	371	anti-parallel
Strand 3	H	402	411	anti-parallel
Strand 4	H	395	396	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	377	380	first strand
Strand 2	H	420	426	anti-parallel
Strand 3	H	431	437	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TJT