Analysis of interatomic Contacts of Structural Units in PDB entry:
8TK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TK0 entry

There are 4 chains in PDB entry 8TK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 575
B	MET 1	SER 575
C	MET 1	SER 575
D	MET 1	SER 575

There are 69 helices in PDB entry 8TK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	47	Right-handed alpha
Helix 2	AA2	A	87	92	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	295	309	Right-handed alpha
Helix 5	AA5	A	353	357	Right-handed 310
Helix 6	AA6	A	358	370	Right-handed alpha
Helix 7	AA7	A	381	395	Right-handed alpha
Helix 8	AA8	A	413	423	Right-handed alpha
Helix 9	AA9	A	448	455	Right-handed alpha
Helix 10	AB1	A	475	493	Right-handed alpha
Helix 11	AB2	A	493	503	Right-handed alpha
Helix 12	AB3	A	511	525	Right-handed alpha
Helix 13	AB4	A	532	540	Right-handed alpha
Helix 14	AB5	A	541	551	Right-handed alpha
Helix 15	AB6	A	553	563	Right-handed alpha
Helix 16	AB7	A	566	574	Right-handed alpha
Helix 17	AB8	B	31	42	Right-handed alpha
Helix 18	AB9	B	47	52	Right-handed alpha
Helix 19	AC1	B	87	92	Right-handed alpha
Helix 20	AC2	B	144	147	Right-handed 310
Helix 21	AC3	B	295	309	Right-handed alpha
Helix 22	AC4	B	358	370	Right-handed alpha
Helix 23	AC5	B	380	395	Right-handed alpha
Helix 24	AC6	B	413	423	Right-handed alpha
Helix 25	AC7	B	447	453	Right-handed alpha
Helix 26	AC8	B	475	492	Right-handed alpha
Helix 27	AC9	B	493	503	Right-handed alpha
Helix 28	AD1	B	511	525	Right-handed alpha
Helix 29	AD2	B	532	540	Right-handed alpha
Helix 30	AD3	B	540	551	Right-handed alpha
Helix 31	AD4	B	553	563	Right-handed alpha
Helix 32	AD5	B	564	567	Right-handed 310
Helix 33	AD6	B	568	574	Right-handed alpha
Helix 34	AD7	C	31	41	Right-handed alpha
Helix 35	AD8	C	42	47	Right-handed alpha
Helix 36	AD9	C	47	52	Right-handed alpha
Helix 37	AE1	C	87	92	Right-handed alpha
Helix 38	AE2	C	144	147	Right-handed 310
Helix 39	AE3	C	295	309	Right-handed alpha
Helix 40	AE4	C	352	356	Right-handed 310
Helix 41	AE5	C	358	370	Right-handed alpha
Helix 42	AE6	C	380	395	Right-handed alpha
Helix 43	AE7	C	413	423	Right-handed alpha
Helix 44	AE8	C	447	455	Right-handed alpha
Helix 45	AE9	C	456	458	Right-handed 310
Helix 46	AF1	C	475	493	Right-handed alpha
Helix 47	AF2	C	493	503	Right-handed alpha
Helix 48	AF3	C	511	525	Right-handed alpha
Helix 49	AF4	C	532	540	Right-handed alpha
Helix 50	AF5	C	540	551	Right-handed alpha
Helix 51	AF6	C	553	559	Right-handed alpha
Helix 52	AF7	C	563	567	Right-handed 310
Helix 53	AF8	C	568	574	Right-handed alpha
Helix 54	AF9	D	33	47	Right-handed alpha
Helix 55	AG1	D	83	92	Right-handed alpha
Helix 56	AG2	D	144	147	Right-handed 310
Helix 57	AG3	D	295	309	Right-handed alpha
Helix 58	AG4	D	358	370	Right-handed alpha
Helix 59	AG5	D	380	395	Right-handed alpha
Helix 60	AG6	D	413	423	Right-handed alpha
Helix 61	AG7	D	448	458	Right-handed alpha
Helix 62	AG8	D	475	493	Right-handed alpha
Helix 63	AG9	D	493	503	Right-handed alpha
Helix 64	AH1	D	511	525	Right-handed alpha
Helix 65	AH2	D	532	540	Right-handed alpha
Helix 66	AH3	D	540	551	Right-handed alpha
Helix 67	AH4	D	553	563	Right-handed alpha
Helix 68	AH5	D	564	566	Right-handed 310
Helix 69	AH6	D	567	574	Right-handed alpha

There are 18 sheets in PDB entry 8TK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	20	first strand
Strand 2	A	2	11	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	104	114	anti-parallel
Strand 5	A	119	127	anti-parallel
Strand 6	A	134	135	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	282	288	parallel
Strand 3	A	315	318	parallel
Strand 4	A	24	29	parallel
Strand 5	A	331	336	parallel
Strand 6	A	344	349	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	374	378	parallel
Strand 3	A	426	432	parallel
Strand 4	A	505	508	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	444	447	anti-parallel
Strand 3	A	465	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	2	11	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	104	114	anti-parallel
Strand 5	B	119	127	anti-parallel
Strand 6	B	134	135	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	282	288	parallel
Strand 3	B	315	318	parallel
Strand 4	B	24	29	parallel
Strand 5	B	331	336	parallel
Strand 6	B	344	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	374	378	parallel
Strand 3	B	426	432	parallel
Strand 4	B	505	508	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	437	first strand
Strand 2	B	444	446	anti-parallel
Strand 3	B	465	466	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	20	first strand
Strand 2	C	2	11	anti-parallel
Strand 3	C	70	76	anti-parallel
Strand 4	C	104	110	anti-parallel
Strand 5	C	123	127	anti-parallel
Strand 6	C	134	135	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	282	288	parallel
Strand 3	C	315	318	parallel
Strand 4	C	24	29	parallel
Strand 5	C	331	336	parallel
Strand 6	C	344	349	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	119	120	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	374	378	parallel
Strand 3	C	426	432	parallel
Strand 4	C	505	508	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	437	first strand
Strand 2	C	444	446	anti-parallel
Strand 3	C	465	466	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	20	first strand
Strand 2	D	2	11	anti-parallel
Strand 3	D	69	76	anti-parallel
Strand 4	D	104	111	anti-parallel
Strand 5	D	123	127	anti-parallel
Strand 6	D	134	135	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	282	288	parallel
Strand 3	D	315	318	parallel
Strand 4	D	24	29	parallel
Strand 5	D	331	336	parallel
Strand 6	D	344	349	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	114	first strand
Strand 2	D	119	120	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	407	first strand
Strand 2	D	374	378	parallel
Strand 3	D	426	432	parallel
Strand 4	D	505	508	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	444	447	anti-parallel
Strand 3	D	465	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TK0