Analysis of interatomic Contacts of Structural Units in PDB entry:
8TK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TK7 entry

There are 6 chains in PDB entry 8TK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 1LEU 277
A
 PRO 1LEU 277
C
 PRO 1LEU 277
E
 GLU 193ARG 202
D
 GLU 193ARG 202
F
 GLU 193ARG 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8TK7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 31Right-handed alpha
Helix 2
AA2
B
32 36Right-handed 310
Helix 3
AA3
B
94 104Right-handed alpha
Helix 4
AA4
B
110 130Right-handed alpha
Helix 5
AA5
B
158 173Right-handed alpha
Helix 6
AA6
B
185 192Right-handed alpha
Helix 7
AA7
B
202 211Right-handed alpha
Helix 8
AA8
A
1 5Right-handed 310
Helix 9
AA9
A
12 31Right-handed alpha
Helix 10
AB1
A
32 37Right-handed alpha
Helix 11
AB2
A
94 105Right-handed alpha
Helix 12
AB3
A
110 130Right-handed alpha
Helix 13
AB4
A
158 173Right-handed alpha
Helix 14
AB5
A
185 193Right-handed alpha
Helix 15
AB6
A
202 211Right-handed alpha
Helix 16
AB7
A
270 272Right-handed 310
Helix 17
AB8
C
12 31Right-handed alpha
Helix 18
AB9
C
32 36Right-handed 310
Helix 19
AC1
C
94 103Right-handed alpha
Helix 20
AC2
C
110 130Right-handed alpha
Helix 21
AC3
C
158 175Right-handed alpha
Helix 22
AC4
C
185 192Right-handed alpha
Helix 23
AC5
C
202 211Right-handed alpha
Helix 24
AC6
C
270 272Right-handed 310
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There are 9 sheets in PDB entry 8TK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
236 248parallel
Strand 3
B
256 268anti-parallel
Strand 4
B
86 93anti-parallel
Strand 5
C
62 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
80 83anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
274 276parallel
Strand 3
B
226 230anti-parallel
Strand 4
B
180 184anti-parallel
Strand 5
B
212 217parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
236 248parallel
Strand 3
A
256 268anti-parallel
Strand 4
A
87 93anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
78 83anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
274 276parallel
Strand 3
A
226 230anti-parallel
Strand 4
A
180 184anti-parallel
Strand 5
A
212 217parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
C
236 248parallel
Strand 3
C
256 268anti-parallel
Strand 4
C
87 93anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 51first strand
Strand 2
C
81 83anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
180 184parallel
Strand 3
C
226 230anti-parallel
Strand 4
C
274 276anti-parallel
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